JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
TULP4_chr6_158307465_158516828	0/0	t0023	6687	2	2	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0024	6688	2	2	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0025	6679	2	2	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0026	6679	2	0	0	2	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0027	6677	2	0	0	2	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0028	6688	2	0	0	2	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0029	6686	2	2	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0030	6688	2	0	1	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0031	6680	2	1	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0032	6688	2	2	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0033	6678	2	0	0	2	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0034	6679	2	1	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0035	6688	2	0	1	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0036	6678	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0037	6679	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0038	6688	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0039	6688	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0040	6689	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0041	6683	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0042	6688	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0043	6684	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0044	6678	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0045	6685	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0046	6678	1	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	1/0	t0047	6687	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0048	6689	1	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0049	6688	1	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0050	6682	1	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0051	6683	1	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0052	6689	1	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0053	6677	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0054	6678	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0055	6717	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0056	6665	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0057	6686	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0058	6688	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0059	6680	1	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0060	6689	1	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0061	6687	1	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0062	6688	1	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0063	6688	1	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0064	6689	1	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0065	6688	1	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0066	6678	1	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0067	6680	1	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0068	6680	1	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0069	6689	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0070	6680	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0071	6689	1	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0072	6682	1	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828