JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TULP4_chr6_158307465_158516828	0/0	t0073	6687	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0074	6682	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0075	6689	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0076	6688	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0077	6689	1	0	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0078	6678	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0079	6678	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0080	6680	1	0	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0081	6688	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0082	6688	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0083	6689	1	0	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0084	6689	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0085	6681	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0086	6680	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0087	6689	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0088	6689	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0089	6683	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0090	6688	1	0	0	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0091	6685	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0092	6678	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0093	6680	1	0	0	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0094	6688	1	1	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0095	6688	1	0	0	0	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0096	6689	1	0	1	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TUNAR_chr14_95871832_95930571	0/1	t0001	2940	133	12	20	75	12	13	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0002	2940	32	0	5	26	0	1	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	1/0	t0003	2940	25	2	11	7	1	3	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0004	2940	22	4	4	9	0	5	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0005	2940	14	2	4	2	1	5	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0006	2940	13	13	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0007	2940	12	12	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0008	2940	11	0	1	4	0	6	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0009	2940	8	2	0	6	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0010	2940	7	7	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0011	2940	7	0	1	5	0	1	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0012	2940	6	6	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0013	2940	4	0	0	4	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0014	2940	3	0	0	3	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0015	2940	3	0	1	2	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0016	2940	3	0	0	3	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0017	2940	3	3	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0018	2940	2	2	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0019	2940	2	0	0	0	0	2	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0020	2940	2	2	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0021	2940	2	0	0	2	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0022	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0023	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0024	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0025	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0026	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571