JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUNAR_chr14_95871832_95930571	0/0	t0027	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0028	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0029	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0030	2944	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0031	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0032	2944	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0033	2944	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0034	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0035	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0036	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0037	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0038	2944	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0039	2940	1	0	1	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0040	2940	1	0	0	1	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0041	2973	1	0	0	1	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0042	2940	1	0	0	1	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0043	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0044	2940	1	0	0	1	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUNAR_chr14_95871832_95930571	0/0	t0045	2940	1	1	0	0	0	0	copy fasta	TUNAR	chr14	95871832	95930571
TUSC1_chr9_25671969_25683444	0/0	t0001	847	241	35	45	129	5	27	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/1	t0002	847	87	24	13	37	4	8	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	1/0	t0003	847	51	0	12	35	1	2	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0004	846	40	20	9	4	1	6	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0005	846	10	9	1	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0006	846	9	1	1	4	1	2	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0007	847	4	4	0	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0008	847	3	0	1	0	0	2	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0009	846	2	2	0	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0010	847	2	0	0	2	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0011	847	1	0	0	1	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0012	847	1	0	0	1	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0013	847	1	0	0	0	0	1	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0014	847	1	0	0	1	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0015	847	1	0	0	1	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0016	847	1	1	0	0	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC1_chr9_25671969_25683444	0/0	t0017	847	1	0	0	1	0	0	copy fasta	TUSC1	chr9	25671969	25683444
TUSC2_chr3_50319909_50333223	1/1	t0001	1337	355	72	65	163	13	40	copy fasta	TUSC2	chr3	50319909	50333223
TUSC2_chr3_50319909_50333223	0/0	t0002	1337	13	11	2	0	0	0	copy fasta	TUSC2	chr3	50319909	50333223
TUSC2_chr3_50319909_50333223	0/0	t0003	1337	12	2	7	0	1	2	copy fasta	TUSC2	chr3	50319909	50333223
TUSC2_chr3_50319909_50333223	0/0	t0004	1337	3	0	3	0	0	0	copy fasta	TUSC2	chr3	50319909	50333223
TUSC2_chr3_50319909_50333223	0/0	t0005	1337	3	0	0	3	0	0	copy fasta	TUSC2	chr3	50319909	50333223
TUSC2_chr3_50319909_50333223	0/0	t0006	1337	2	2	0	0	0	0	copy fasta	TUSC2	chr3	50319909	50333223
TUSC2_chr3_50319909_50333223	0/0	t0007	1337	2	2	0	0	0	0	copy fasta	TUSC2	chr3	50319909	50333223
TUSC2_chr3_50319909_50333223	0/0	t0008	1337	1	0	0	1	0	0	copy fasta	TUSC2	chr3	50319909	50333223
TUSC2_chr3_50319909_50333223	0/0	t0009	1337	1	0	0	0	0	1	copy fasta	TUSC2	chr3	50319909	50333223
TUSC2_chr3_50319909_50333223	0/0	t0010	1337	1	1	0	0	0	0	copy fasta	TUSC2	chr3	50319909	50333223
TUSC2_chr3_50319909_50333223	0/0	t0011	1337	1	0	1	0	0	0	copy fasta	TUSC2	chr3	50319909	50333223
TUSC2_chr3_50319909_50333223	0/0	t0012	1337	1	0	0	0	0	1	copy fasta	TUSC2	chr3	50319909	50333223
TUSC2_chr3_50319909_50333223	0/0	t0013	1337	1	0	0	1	0	0	copy fasta	TUSC2	chr3	50319909	50333223
TUSC3_chr8_15535263_15771638	1/0	t0001	2651	77	6	19	34	4	13	copy fasta	TUSC3	chr8	15535263	15771638