JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUSC3_chr8_15535263_15771638	0/0	t0002	2651	76	9	12	49	2	4	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/1	t0003	2651	55	8	7	30	1	8	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0004	2651	50	18	4	26	0	2	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0005	2654	12	0	5	4	0	3	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0006	2654	10	0	6	0	3	1	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0007	2651	9	5	0	4	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0008	2651	8	8	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0009	2651	7	1	0	5	0	1	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0010	2652	5	4	1	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0011	2651	5	0	0	5	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0012	2652	4	3	1	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0013	2651	4	1	0	2	0	1	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0014	2651	3	3	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0015	2654	3	0	1	0	2	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0016	2652	3	3	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0017	2654	3	0	0	0	1	2	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0018	2651	3	1	0	1	0	1	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0019	2651	2	2	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0020	2651	2	2	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0021	2651	2	0	0	0	0	2	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0022	2651	2	2	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0023	2651	2	2	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0024	2623	2	2	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0025	2651	2	1	0	0	1	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0026	2650	2	0	2	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0027	2652	1	1	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0028	2651	1	1	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0029	2651	1	1	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0030	2650	1	0	0	1	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0031	2651	1	0	0	0	0	1	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0032	2651	1	0	0	0	0	1	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0033	2651	1	0	0	0	0	1	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0034	2651	1	0	0	1	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0035	2651	1	1	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0036	2651	1	0	0	1	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0037	2651	1	1	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0038	2651	1	0	0	1	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0039	2651	1	1	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0040	2651	1	1	0	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0041	2651	1	0	1	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0042	2651	1	0	1	0	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0043	2650	1	0	0	1	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0044	2654	1	0	0	0	0	1	copy fasta	TUSC3	chr8	15535263	15771638
TUSC3_chr8_15535263_15771638	0/0	t0045	2651	1	0	0	1	0	0	copy fasta	TUSC3	chr8	15535263	15771638
TUT1_chr11_62570052_62596523	0/0	t0001	81	290	86	68	90	14	32	copy fasta	TUT1	chr11	62570052	62596523
TUT4_chr1_52418275_52558092	1/1	t0001	916	234	83	33	88	7	21	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	t0002	916	13	5	1	1	1	5	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	t0003	916	1	1	0	0	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	t0004	916	1	0	0	1	0	0	copy fasta	TUT4	chr1	52418275	52558092
TUT4_chr1_52418275_52558092	0/0	t0005	916	1	1	0	0	0	0	copy fasta	TUT4	chr1	52418275	52558092