JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUT7_chr9_86282733_86359410	0/1	t0001	1116	317	79	48	147	10	32	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	1/0	t0002	1116	31	1	17	2	6	4	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	t0003	1116	3	3	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	t0004	1116	3	3	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	t0005	1116	2	0	1	1	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	t0006	1116	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	t0007	1116	1	0	0	0	0	1	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	t0008	1116	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	t0009	1116	1	0	0	0	0	1	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	t0010	1116	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TUT7_chr9_86282733_86359410	0/0	t0011	1116	1	1	0	0	0	0	copy fasta	TUT7	chr9	86282733	86359410
TVP23A_chr16_10761675_10823794	0/0	t0001	2726	86	9	10	57	2	8	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	1/0	t0002	2729	81	6	17	44	6	7	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0003	2729	50	0	15	34	0	1	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0004	2729	34	0	10	16	4	4	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0005	2729	24	10	2	11	1	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0006	2730	23	1	6	2	0	14	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0007	2728	13	12	1	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0008	2728	7	7	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0009	2728	6	6	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0010	2729	6	1	3	0	2	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0011	2728	5	5	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0012	2729	5	5	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0013	2726	4	2	0	0	0	2	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/1	t0014	2729	4	1	1	0	0	1	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0015	2728	4	4	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0016	2727	4	0	4	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0017	2729	3	3	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0018	2730	3	0	0	1	0	2	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0019	2729	3	0	0	3	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0020	2728	2	0	2	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0021	2729	2	0	1	0	0	1	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0022	2729	2	2	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0023	2726	2	1	1	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0024	2728	2	2	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0025	2729	2	1	1	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0026	2729	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0027	2728	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0028	2728	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0029	2726	1	0	0	0	0	1	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0030	2728	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0031	2728	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0032	2729	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0033	2729	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0034	2729	1	0	0	0	1	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0035	2729	1	0	0	1	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0036	2729	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0037	2729	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0038	2729	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0039	2729	1	0	0	1	0	0	copy fasta	TVP23A	chr16	10761675	10823794