JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TVP23A_chr16_10761675_10823794	0/0	t0040	2730	1	0	1	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0041	2730	1	0	1	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0042	2729	1	0	0	1	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0043	2729	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0044	2729	1	0	1	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0045	2730	1	0	0	0	0	1	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0046	2730	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0047	2737	1	0	0	1	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0048	2740	1	0	0	1	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0049	2740	1	0	0	1	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0050	2728	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0051	2729	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0052	2729	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0053	2728	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0054	2728	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0055	2729	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0056	2729	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0057	2729	1	0	1	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23A_chr16_10761675_10823794	0/0	t0058	2729	1	1	0	0	0	0	copy fasta	TVP23A	chr16	10761675	10823794
TVP23B_chr17_18776183_18811714	0/0	t0001	1257	142	18	23	85	4	12	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	t0002	1259	137	28	29	61	6	13	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	1/1	t0003	1259	90	27	17	30	6	8	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	t0004	1259	36	13	3	16	1	3	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	t0005	1259	22	8	9	0	1	4	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	t0006	1259	2	0	0	0	0	2	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	t0007	1259	2	0	1	0	0	1	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	t0008	1259	2	2	0	0	0	0	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	t0009	1259	1	0	0	1	0	0	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	t0010	1259	1	0	0	0	0	1	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	t0011	1259	1	0	0	1	0	0	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	t0012	1259	1	0	0	0	0	1	copy fasta	TVP23B	chr17	18776183	18811714
TVP23B_chr17_18776183_18811714	0/0	t0013	1259	1	0	0	0	0	1	copy fasta	TVP23B	chr17	18776183	18811714
TVP23C_chr17_15531980_15568483	0/0	t0001	3468	112	3	19	84	4	2	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	1/0	t0002	3468	78	9	12	45	2	9	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/1	t0003	3468	68	2	19	28	6	12	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0004	3468	46	3	4	33	2	4	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0005	3468	45	30	6	6	0	3	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0006	3469	12	11	1	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0007	3468	9	8	1	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0008	3468	7	2	2	1	1	1	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0009	3467	6	6	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0010	3468	4	4	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0011	3468	3	3	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0012	3469	3	1	2	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0013	3468	2	2	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0014	3468	2	2	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0015	3468	2	2	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0016	3468	2	2	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0017	3439	1	0	0	1	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0018	3468	1	0	1	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483