JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TVP23C_chr17_15531980_15568483	0/0	t0019	3468	1	1	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0020	3468	1	1	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0021	3468	1	0	0	0	0	1	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0022	3468	1	0	0	1	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0023	3469	1	1	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0024	3468	1	0	0	1	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0025	3468	1	1	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0026	3468	1	0	0	0	0	1	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0027	3468	1	0	1	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0028	3468	1	0	0	1	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0029	3468	1	0	1	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0030	3467	1	1	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0031	3468	1	1	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0032	3468	1	1	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0033	3468	1	0	1	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0034	3468	1	0	0	1	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0035	3468	1	0	0	0	0	1	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0036	3468	1	0	0	0	1	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0037	3468	1	0	1	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0038	3468	1	0	1	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TVP23C_chr17_15531980_15568483	0/0	t0039	3468	1	1	0	0	0	0	copy fasta	TVP23C	chr17	15531980	15568483
TWF1_chr12_43788723_43811317	1/1	t0001	1935	282	54	50	134	11	31	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0002	1935	43	23	8	9	1	2	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0003	1935	20	0	7	9	0	4	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0004	1935	11	6	4	0	0	1	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0005	1935	5	2	0	3	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0006	1935	5	5	0	0	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0007	1935	2	1	1	0	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0008	1935	1	0	0	1	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0009	1935	1	0	0	1	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0010	1935	1	1	0	0	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0011	1935	1	0	0	0	0	1	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0012	1935	1	0	0	0	0	1	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0013	1935	1	0	0	0	0	1	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0014	1935	1	0	0	0	0	1	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0015	1935	1	0	0	1	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0016	1935	1	0	1	0	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0017	1935	1	1	0	0	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0018	1935	1	0	0	1	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0019	1935	1	1	0	0	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0020	1935	1	0	1	0	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF1_chr12_43788723_43811317	0/0	t0021	1935	1	0	0	1	0	0	copy fasta	TWF1	chr12	43788723	43811317
TWF2_chr3_52223612_52244158	1/1	t0001	565	360	88	69	148	16	37	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	t0002	577	3	0	3	0	0	0	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	t0003	565	2	0	0	0	0	2	copy fasta	TWF2	chr3	52223612	52244158
TWF2_chr3_52223612_52244158	0/0	t0004	565	1	0	0	0	0	1	copy fasta	TWF2	chr3	52223612	52244158
TWIST1_chr7_19110468_19122636	0/0	t0001	1021	287	64	35	146	8	34	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	1/1	t0002	1022	65	10	24	15	4	10	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0003	1020	56	9	11	34	0	2	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0004	1022	5	5	0	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636