JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TWIST1_chr7_19110468_19122636	0/0	t0005	1021	4	0	0	4	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0006	1021	2	0	2	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0007	1033	2	0	0	0	0	2	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0008	1021	1	1	0	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0009	1020	1	0	1	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0010	1021	1	1	0	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0011	1021	1	0	0	1	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0012	1020	1	0	0	1	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0013	1021	1	0	0	1	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0014	1021	1	1	0	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0015	1020	1	1	0	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0016	1021	1	1	0	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0017	1022	1	1	0	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST1_chr7_19110468_19122636	0/0	t0018	1022	1	0	1	0	0	0	copy fasta	TWIST1	chr7	19110468	19122636
TWIST2_chr2_238843085_238915534	0/1	t0001	860	191	47	36	78	6	23	copy fasta	TWIST2	chr2	238843085	238915534
TWIST2_chr2_238843085_238915534	1/0	t0002	860	98	19	28	35	6	9	copy fasta	TWIST2	chr2	238843085	238915534
TWIST2_chr2_238843085_238915534	0/0	t0003	860	46	14	1	23	2	6	copy fasta	TWIST2	chr2	238843085	238915534
TWIST2_chr2_238843085_238915534	0/0	t0004	860	1	1	0	0	0	0	copy fasta	TWIST2	chr2	238843085	238915534
TWIST2_chr2_238843085_238915534	0/0	t0005	860	1	1	0	0	0	0	copy fasta	TWIST2	chr2	238843085	238915534
TWIST2_chr2_238843085_238915534	0/0	t0006	860	1	0	1	0	0	0	copy fasta	TWIST2	chr2	238843085	238915534
TWNK_chr10_100982543_100999403	1/1	t0001	1562	215	50	49	81	10	23	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0002	1562	129	32	12	74	3	8	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0003	1562	14	0	4	1	3	6	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0004	1562	7	5	1	1	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0005	1562	3	3	0	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0006	1562	2	0	2	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0007	1562	2	0	2	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0008	1562	2	0	0	2	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0009	1562	2	0	0	2	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0010	1562	2	0	2	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0011	1562	1	0	0	0	0	1	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0012	1562	1	1	0	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0013	1562	1	0	1	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0014	1562	1	0	0	1	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0015	1562	1	0	0	0	0	1	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0016	1562	1	1	0	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0017	1562	1	0	0	0	0	1	copy fasta	TWNK	chr10	100982543	100999403
TWNK_chr10_100982543_100999403	0/0	t0018	1562	1	0	1	0	0	0	copy fasta	TWNK	chr10	100982543	100999403
TWSG1_chr18_9329773_9407420	0/1	t0001	3080	141	24	24	64	6	22	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0002	3080	140	21	26	68	8	17	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0003	3406	12	7	4	0	0	1	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0004	3407	11	6	2	0	0	3	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0005	3079	7	7	0	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0006	3080	6	0	0	6	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0007	3080	5	5	0	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0008	3080	4	4	0	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0009	3080	4	0	0	4	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0010	3079	3	3	0	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0011	3079	3	3	0	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0012	3080	3	0	2	0	1	0	copy fasta	TWSG1	chr18	9329773	9407420