JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TWSG1_chr18_9329773_9407420	0/0	t0013	3408	2	0	1	0	0	1	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0014	3080	2	0	0	2	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0015	3080	1	1	0	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0016	3080	1	0	1	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0017	3080	1	1	0	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0018	3080	1	1	0	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0019	3080	1	0	1	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0020	3080	1	1	0	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	1/0	t0021	3079	1	0	0	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0022	3080	1	0	0	0	1	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0023	3080	1	0	1	0	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0024	3080	1	0	0	1	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TWSG1_chr18_9329773_9407420	0/0	t0025	3080	1	0	0	1	0	0	copy fasta	TWSG1	chr18	9329773	9407420
TXK_chr4_48061393_48139250	0/1	t0001	1325	236	53	39	112	9	22	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	t0002	1325	63	1	18	35	1	8	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	t0003	1325	34	13	6	0	4	11	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	1/0	t0004	1325	19	17	1	0	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	t0005	1325	5	5	0	0	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	t0006	1325	2	2	0	0	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	t0007	1325	1	1	0	0	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	t0008	1325	1	0	0	1	0	0	copy fasta	TXK	chr4	48061393	48139250
TXK_chr4_48061393_48139250	0/0	t0009	1325	1	0	0	0	0	1	copy fasta	TXK	chr4	48061393	48139250
TXLNA_chr1_32174675_32203285	1/1	t0001	3225	159	30	28	70	8	21	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0002	3223	66	4	17	36	1	8	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0003	3226	22	4	1	10	0	7	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0004	3225	19	17	0	1	0	1	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0005	3224	10	0	1	8	0	1	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0006	3226	10	1	4	2	1	2	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0007	3226	7	7	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0008	3224	6	0	1	4	0	1	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0009	3224	6	4	2	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0010	3222	5	4	1	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0011	3222	5	5	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0012	3223	5	0	0	5	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0013	3223	4	4	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0014	3225	3	3	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0015	3227	3	1	0	1	0	1	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0016	3223	2	1	1	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0017	3226	2	2	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0018	3226	2	2	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0019	3225	1	0	0	1	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0020	3226	1	0	0	1	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0021	3223	1	1	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0022	3223	1	0	0	1	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0023	3222	1	1	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0024	3224	1	0	0	1	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0025	3224	1	0	0	1	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0026	3226	1	0	0	1	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0027	3224	1	1	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0028	3226	1	1	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285