JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TXLNA_chr1_32174675_32203285	0/0	t0029	3225	1	0	1	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0030	3225	1	0	1	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0031	3225	1	0	0	0	1	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0032	3225	1	1	0	0	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0033	3225	1	0	0	1	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0034	3224	1	0	0	1	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0035	3225	1	0	0	0	1	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNA_chr1_32174675_32203285	0/0	t0036	3225	1	0	0	1	0	0	copy fasta	TXLNA	chr1	32174675	32203285
TXLNB_chr6_139235061_139296998	1/0	t0001	2558	120	12	21	64	6	16	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0002	2555	44	28	7	7	1	1	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/1	t0003	2555	41	8	12	11	0	9	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0004	2558	18	9	7	0	0	2	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0005	2555	17	16	0	0	1	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0006	2555	9	0	0	8	0	1	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0007	2555	6	0	2	0	1	3	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0008	2549	5	5	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0009	2555	3	1	2	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0010	2558	3	0	0	3	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0011	2555	2	2	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0012	2555	2	0	0	2	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0013	2555	2	2	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0014	2555	2	2	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0015	2558	2	0	0	2	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0016	2558	2	2	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0017	2555	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0018	2555	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0019	2555	1	0	0	0	0	1	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0020	2555	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0021	2555	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0022	2555	1	0	1	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0023	2555	1	0	1	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0024	2555	1	0	0	1	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0025	2555	1	0	1	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0026	2555	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0027	2555	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0028	2555	1	1	0	0	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0029	2558	1	0	0	1	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0030	2558	1	0	0	1	0	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0031	2558	1	0	0	0	1	0	copy fasta	TXLNB	chr6	139235061	139296998
TXLNB_chr6_139235061_139296998	0/0	t0032	2555	1	0	0	0	0	1	copy fasta	TXLNB	chr6	139235061	139296998
TXLNG_chrX_16781466_16849519	0/0	t0001	2776	83	10	19	47	3	4	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	1/0	t0002	2776	52	4	16	13	6	12	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0003	2775	49	12	8	25	1	3	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0004	2777	17	2	4	10	0	1	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0005	2775	8	6	1	1	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0006	2775	7	7	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0007	2778	5	0	0	3	0	2	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0008	2776	4	4	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0009	2776	4	3	0	1	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0010	2751	3	2	1	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519