JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TXLNG_chrX_16781466_16849519	0/0	t0011	2779	2	0	0	1	0	1	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0012	2774	2	2	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0013	2776	2	2	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0014	2778	2	0	0	0	0	2	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0015	2775	1	0	0	1	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0016	2776	1	0	0	1	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0017	2776	1	0	1	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/1	t0018	2776	1	0	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0019	2776	1	0	0	1	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0020	2776	1	0	1	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0021	2777	1	0	1	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0022	2775	1	0	0	0	0	1	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0023	2778	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0024	2775	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0025	2775	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0026	2775	1	0	0	1	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0027	2775	1	0	0	1	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0028	2775	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0029	2778	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0030	2775	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0031	2775	1	0	0	1	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0032	2776	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0033	2799	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0034	2776	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0035	2776	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0036	2776	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0037	2776	1	0	0	0	1	0	copy fasta	TXLNG	chrX	16781466	16849519
TXLNG_chrX_16781466_16849519	0/0	t0038	2777	1	1	0	0	0	0	copy fasta	TXLNG	chrX	16781466	16849519
TXN2_chr22_36462046_36486640	1/1	t0001	836	266	74	52	99	9	30	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	t0002	836	31	0	6	25	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	t0003	836	17	14	2	1	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	t0004	836	13	2	0	10	0	1	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	t0005	836	2	2	0	0	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	t0006	836	2	0	1	0	1	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	t0007	836	2	0	0	0	0	2	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	t0008	836	2	2	0	0	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	t0009	836	1	0	0	1	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	t0010	836	1	0	0	1	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	t0011	836	1	0	1	0	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	t0012	836	1	0	0	1	0	0	copy fasta	TXN2	chr22	36462046	36486640
TXN2_chr22_36462046_36486640	0/0	t0013	836	1	0	0	0	0	1	copy fasta	TXN2	chr22	36462046	36486640
TXNDC11_chr16_11674083_11747857	1/1	t0001	240	369	78	62	168	18	41	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	t0002	240	4	0	0	4	0	0	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC11_chr16_11674083_11747857	0/0	t0003	240	1	0	0	0	0	1	copy fasta	TXNDC11	chr16	11674083	11747857
TXNDC12_chr1_52015131_52060191	1/0	t0001	898	201	82	28	57	5	28	copy fasta	TXNDC12	chr1	52015131	52060191
TXNDC12_chr1_52015131_52060191	0/0	t0002	898	31	0	4	27	0	0	copy fasta	TXNDC12	chr1	52015131	52060191
TXNDC12_chr1_52015131_52060191	0/0	t0003	898	15	6	1	2	1	5	copy fasta	TXNDC12	chr1	52015131	52060191
TXNDC12_chr1_52015131_52060191	0/1	t0004	895	4	1	1	0	0	1	copy fasta	TXNDC12	chr1	52015131	52060191
TXNDC12_chr1_52015131_52060191	0/0	t0005	898	1	1	0	0	0	0	copy fasta	TXNDC12	chr1	52015131	52060191
TXNDC15_chr5_134869371_134906635	1/0	t0001	2008	240	39	31	133	8	28	copy fasta	TXNDC15	chr5	134869371	134906635