Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACTC1_chr15_34785230_34800549	1/1	t0001	249	461	82	74	240	17	46	copy fasta	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	t0002	249	29	15	9	2	1	2	copy fasta	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	t0003	249	2	2	0	0	0	0	copy fasta	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	t0004	249	1	1	0	0	0	0	copy fasta	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	t0005	249	1	0	0	1	0	0	copy fasta	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	t0006	249	1	0	0	1	0	0	copy fasta	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	t0007	249	1	0	1	0	0	0	copy fasta	ACTC1	chr15	34785230	34800549
ACTG1_chr17_81504971_81517799	0/1	t0001	792	235	49	56	80	13	36	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	1/0	t0002	792	56	17	9	25	2	2	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0003	792	23	0	3	11	0	9	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0004	794	7	7	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0005	794	7	1	0	5	0	1	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0006	792	5	4	1	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0007	792	3	0	0	3	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0008	792	3	0	0	3	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0009	792	3	3	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0010	792	3	3	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0011	792	2	0	1	0	1	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0012	792	2	2	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0013	792	2	0	0	2	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0014	792	1	0	1	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0015	792	1	0	0	1	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0016	792	1	0	1	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0017	793	1	0	0	0	0	1	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0018	792	1	0	0	1	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0019	792	1	0	0	1	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0020	792	1	0	1	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0021	792	1	1	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0022	794	1	0	0	1	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0023	792	1	1	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0024	792	1	0	0	0	0	1	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0025	792	1	1	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0026	792	1	0	0	1	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0027	792	1	1	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0028	792	1	1	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0029	792	1	1	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0030	792	1	0	1	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0031	792	1	0	0	1	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	t0032	792	1	0	0	1	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG2_chr2_73888008_73924865	0/1	t0001	371	149	17	34	66	9	22	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	1/0	t0002	371	91	12	5	62	3	8	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	0/0	t0003	371	89	28	17	37	1	6	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	0/0	t0004	371	59	23	6	27	0	3	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	0/0	t0005	371	19	9	4	0	1	5	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	0/0	t0006	371	4	3	1	0	0	0	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	0/0	t0007	371	2	1	1	0	0	0	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	0/0	t0008	371	2	2	0	0	0	0	copy fasta	ACTG2	chr2	73888008	73924865
ACTG2_chr2_73888008_73924865	0/0	t0009	371	1	1	0	0	0	0	copy fasta	ACTG2	chr2	73888008	73924865
ACTL10_chr20_33661943_33673525	0/0	t0001	846	133	44	16	53	10	10	copy fasta	ACTL10	chr20	33661943	33673525
ACTL10_chr20_33661943_33673525	1/1	t0002	846	86	3	28	31	3	19	copy fasta	ACTL10	chr20	33661943	33673525