JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TXNDC15_chr5_134869371_134906635	0/1	t0002	2008	111	20	38	32	4	16	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0003	2013	20	8	1	11	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0004	2013	11	7	4	0	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0005	2013	5	4	1	0	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0006	2007	4	0	0	4	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0007	2008	4	4	0	0	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0008	2008	4	0	0	4	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0009	2008	3	3	0	0	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0010	2008	3	3	0	0	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0011	2013	2	2	0	0	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0012	2008	2	1	1	0	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0013	2008	1	1	0	0	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0014	2008	1	0	0	0	0	1	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0015	2008	1	0	0	0	0	1	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0016	2008	1	0	0	1	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0017	2008	1	0	1	0	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0018	2008	1	0	0	1	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0019	2008	1	0	0	1	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0020	2008	1	0	0	1	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC15_chr5_134869371_134906635	0/0	t0021	2008	1	0	1	0	0	0	copy fasta	TXNDC15	chr5	134869371	134906635
TXNDC16_chr14_52425596_52557505	1/1	t0001	2080	145	23	18	64	6	32	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0002	2080	38	9	4	22	1	2	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0003	2080	22	2	3	12	0	5	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0004	2080	10	8	2	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0005	2080	5	0	2	3	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0006	2081	3	2	1	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0007	2080	2	0	0	0	1	1	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0008	2080	2	0	1	0	1	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0009	2080	2	0	1	0	1	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0010	2080	1	0	0	1	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0011	2080	1	1	0	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0012	2080	1	0	0	1	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0013	2080	1	1	0	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0014	2080	1	1	0	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0015	2080	1	0	0	1	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0016	2080	1	0	0	0	1	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0017	2080	1	1	0	0	0	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC16_chr14_52425596_52557505	0/0	t0018	2080	1	0	0	0	1	0	copy fasta	TXNDC16	chr14	52425596	52557505
TXNDC17_chr17_6636060_6649541	0/0	t0001	1546	260	69	42	115	5	29	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	1/1	t0002	1546	119	2	22	72	5	16	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	t0003	1546	10	9	1	0	0	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	t0004	1546	8	1	2	1	3	1	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	t0005	1546	6	6	0	0	0	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	t0006	1546	5	5	0	0	0	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	t0007	1546	3	0	2	0	1	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	t0008	1546	3	3	0	0	0	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	t0009	1546	1	0	0	1	0	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	t0010	1546	1	0	1	0	0	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	t0011	1546	1	0	0	1	0	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	t0012	1546	1	0	0	1	0	0	copy fasta	TXNDC17	chr17	6636060	6649541