JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TXNDC17_chr17_6636060_6649541	0/0	t0013	1546	1	0	0	1	0	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC17_chr17_6636060_6649541	0/0	t0014	1546	1	1	0	0	0	0	copy fasta	TXNDC17	chr17	6636060	6649541
TXNDC2_chr18_9880973_9894275	0/1	t0001	1335	242	28	38	142	13	20	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	t0002	1335	96	20	16	39	4	17	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	t0003	1335	36	10	14	6	0	6	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	t0004	1335	26	25	1	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	t0005	1335	13	0	9	0	1	3	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	t0006	1335	4	0	4	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	1/0	t0007	1335	3	0	2	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	t0008	1335	2	2	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	t0009	1335	2	0	0	2	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	t0010	1335	1	0	0	1	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	t0011	1335	1	1	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	t0012	1335	1	1	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC2_chr18_9880973_9894275	0/0	t0013	1335	1	1	0	0	0	0	copy fasta	TXNDC2	chr18	9880973	9894275
TXNDC5_chr6_7876517_7915788	1/1	t0001	1640	293	43	60	143	12	33	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0002	1625	37	30	4	0	2	1	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0003	1625	32	4	5	14	2	7	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0004	1625	7	7	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0005	1641	6	0	0	6	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0006	1640	4	1	1	0	0	2	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0007	1640	4	4	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0008	1640	2	0	0	2	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0009	1635	2	1	0	1	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0010	1640	2	2	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0011	1625	2	2	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0012	1625	1	0	0	1	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0013	1640	1	1	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0014	1640	1	0	1	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0015	1663	1	1	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0016	1640	1	0	1	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0017	1640	1	0	0	0	0	1	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0018	1640	1	0	0	1	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0019	1640	1	1	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0020	1620	1	0	0	1	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0021	1640	1	1	0	0	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC5_chr6_7876517_7915788	0/0	t0022	1640	1	0	0	1	0	0	copy fasta	TXNDC5	chr6	7876517	7915788
TXNDC8_chr9_110298476_110342863	1/1	t0001	274	412	89	78	186	16	41	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC8_chr9_110298476_110342863	0/0	t0002	274	3	3	0	0	0	0	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC8_chr9_110298476_110342863	0/0	t0003	274	1	0	0	0	0	1	copy fasta	TXNDC8	chr9	110298476	110342863
TXNDC9_chr2_99313982_99341333	1/1	t0001	828	366	93	75	148	12	36	copy fasta	TXNDC9	chr2	99313982	99341333
TXNDC9_chr2_99313982_99341333	0/0	t0002	828	1	1	0	0	0	0	copy fasta	TXNDC9	chr2	99313982	99341333
TXNDC9_chr2_99313982_99341333	0/0	t0003	828	1	0	1	0	0	0	copy fasta	TXNDC9	chr2	99313982	99341333
TXNDC9_chr2_99313982_99341333	0/0	t0004	828	1	1	0	0	0	0	copy fasta	TXNDC9	chr2	99313982	99341333
TXNDC9_chr2_99313982_99341333	0/0	t0005	828	1	1	0	0	0	0	copy fasta	TXNDC9	chr2	99313982	99341333
TXNIP_chr1_145987435_146001579	0/1	t0001	1730	198	32	53	78	10	24	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0002	1731	114	39	16	56	0	3	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	1/0	t0003	1730	65	8	2	48	0	6	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0004	1731	6	6	0	0	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0005	1731	2	2	0	0	0	0	copy fasta	TXNIP	chr1	145987435	146001579