JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TXNIP_chr1_145987435_146001579	0/0	t0006	1730	2	0	2	0	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0007	1731	2	0	0	2	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0008	1734	2	2	0	0	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0009	1730	2	0	0	2	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0010	1730	1	1	0	0	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0011	1717	1	0	0	1	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0012	1731	1	0	0	1	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0013	1734	1	1	0	0	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0014	1730	1	0	1	0	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0015	1731	1	1	0	0	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0016	1727	1	0	0	1	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0017	1727	1	0	0	0	0	1	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0018	1730	1	1	0	0	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0019	1730	1	0	0	1	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0020	1730	1	0	0	0	0	1	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0021	1730	1	0	0	0	0	1	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0022	1730	1	0	0	0	0	1	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0023	1727	1	0	0	0	0	1	copy fasta	TXNIP	chr1	145987435	146001579
TXNIP_chr1_145987435_146001579	0/0	t0024	1731	1	1	0	0	0	0	copy fasta	TXNIP	chr1	145987435	146001579
TXNL1_chr18_56592209_56643592	0/0	t0001	5897	52	0	6	43	1	2	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0002	5967	50	4	13	18	4	11	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0003	5967	44	5	8	26	4	1	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0004	5971	22	0	1	16	2	3	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0005	5965	12	12	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0006	5968	10	10	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	1/0	t0007	5971	9	7	1	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0008	5898	8	0	3	5	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0009	5966	7	0	0	7	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0010	5963	7	7	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0011	5968	6	0	1	0	2	3	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0012	5968	5	3	1	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0013	5969	5	5	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0014	5972	5	5	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0015	5897	4	3	1	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0016	5965	4	0	0	4	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0017	5968	4	0	2	2	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0018	5970	4	0	1	3	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0019	5965	4	0	1	3	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0020	5897	3	0	0	3	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0021	5967	3	0	0	0	0	3	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0022	5900	3	2	1	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0023	6035	3	3	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0024	5965	3	0	0	3	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0025	5967	2	0	0	2	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0026	6103	2	1	1	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/1	t0027	5897	2	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0028	5965	2	2	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0029	6035	2	2	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0030	5970	2	2	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0031	5970	2	0	0	2	0	0	copy fasta	TXNL1	chr18	56592209	56643592