JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TXNL1_chr18_56592209_56643592	0/0	t0032	5971	2	2	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0033	5971	2	2	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0034	5967	2	0	0	0	1	1	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0035	5968	1	0	0	0	0	1	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0036	5966	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0037	5896	1	0	1	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0038	5966	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0039	5829	1	0	0	0	0	1	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0040	5897	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0041	5898	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0042	5763	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0043	5831	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0044	6035	1	0	1	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0045	5899	1	0	1	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0046	5899	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0047	5968	1	0	0	0	0	1	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0048	5966	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0049	5968	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0050	5967	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0051	5967	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0052	5968	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0053	5967	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0054	5955	1	0	1	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0055	5967	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0056	5965	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0057	5969	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0058	5967	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0059	5967	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0060	5897	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0061	5963	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0062	5968	1	0	1	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0063	5968	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0064	5969	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0065	5969	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0066	5967	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0067	6103	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0068	6103	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0069	6036	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0070	5971	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0071	5969	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0072	5969	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0073	6104	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0074	5971	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0075	5971	1	0	0	0	0	1	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0076	5971	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0077	5966	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0078	5964	1	0	0	1	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL1_chr18_56592209_56643592	0/0	t0079	5970	1	1	0	0	0	0	copy fasta	TXNL1	chr18	56592209	56643592
TXNL4A_chr18_79965813_79993563	0/0	t0001	3044	99	3	15	67	1	13	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	1/0	t0002	3044	65	32	9	18	2	3	copy fasta	TXNL4A	chr18	79965813	79993563