JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TXNL4A_chr18_79965813_79993563	0/1	t0003	3045	60	2	6	41	3	7	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0004	3044	52	20	7	11	2	12	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0005	3044	43	3	11	21	4	4	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0006	3044	22	16	5	0	0	1	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0007	3045	6	0	5	0	1	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0008	3044	4	3	0	1	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0009	3044	4	3	1	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0010	3044	4	4	0	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0011	3044	3	0	0	3	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0012	3044	2	0	1	1	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0013	3044	2	0	0	1	0	1	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0014	3044	2	0	0	2	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0015	3044	2	0	2	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0016	3044	2	1	0	1	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0017	3044	1	0	1	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0018	3044	1	0	0	1	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0019	3044	1	0	0	1	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0020	3045	1	0	0	0	1	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0021	3045	1	0	0	0	0	1	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0022	3045	1	0	0	0	0	1	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0023	3045	1	0	0	0	0	1	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0024	3044	1	1	0	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0025	3044	1	0	1	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0026	3044	1	0	1	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0027	3044	1	0	1	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0028	3044	1	0	0	1	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0029	3044	1	0	1	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0030	3044	1	1	0	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0031	3044	1	1	0	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0032	3044	1	1	0	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0033	3044	1	0	1	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4A_chr18_79965813_79993563	0/0	t0034	3044	1	1	0	0	0	0	copy fasta	TXNL4A	chr18	79965813	79993563
TXNL4B_chr16_72079857_72098620	0/1	t0001	2072	166	34	18	79	5	29	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	1/0	t0002	2072	158	12	40	85	8	12	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0003	2070	17	0	2	12	2	1	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0004	2072	16	16	0	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0005	2072	11	10	1	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0006	2072	10	0	10	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0007	2069	6	6	0	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0008	2072	6	0	0	6	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0009	2072	3	0	0	3	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0010	2072	2	0	2	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0011	2072	1	1	0	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0012	2072	1	0	0	1	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0013	2072	1	0	0	1	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0014	2072	1	0	1	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0015	2072	1	0	0	0	1	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0016	2072	1	1	0	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0017	2072	1	1	0	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0018	2072	1	1	0	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620