JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TXNL4B_chr16_72079857_72098620	0/0	t0019	2072	1	0	1	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0020	2072	1	0	1	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0021	2072	1	0	1	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0022	2072	1	0	0	1	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0023	2072	1	0	0	1	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0024	2070	1	0	0	1	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0025	2072	1	1	0	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0026	2072	1	1	0	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNL4B_chr16_72079857_72098620	0/0	t0027	2072	1	0	1	0	0	0	copy fasta	TXNL4B	chr16	72079857	72098620
TXNRD1_chr12_104210779_104355307	1/1	t0001	1911	229	73	45	62	17	30	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	t0002	1911	38	1	3	33	0	1	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	t0003	1911	22	12	5	0	1	4	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	t0004	1911	4	3	1	0	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	t0005	1911	3	3	0	0	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	t0006	1911	2	0	0	2	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	t0007	1911	1	1	0	0	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	t0008	1911	1	0	0	1	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	t0009	1911	1	0	0	0	0	1	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD1_chr12_104210779_104355307	0/0	t0010	1911	1	1	0	0	0	0	copy fasta	TXNRD1	chr12	104210779	104355307
TXNRD2_chr22_19870522_19946818	1/1	t0001	367	270	26	58	138	14	32	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	t0002	366	73	56	5	8	0	4	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	t0003	366	28	6	11	5	0	6	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD2_chr22_19870522_19946818	0/0	t0004	367	1	0	0	1	0	0	copy fasta	TXNRD2	chr22	19870522	19946818
TXNRD3_chr3_126602050_126660124	1/1	t0001	990	341	89	72	127	14	37	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	t0002	990	4	0	0	4	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	t0003	990	4	2	2	0	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	t0004	990	2	2	0	0	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	t0005	990	1	0	0	0	0	1	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	t0006	990	1	0	0	1	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXNRD3_chr3_126602050_126660124	0/0	t0007	990	1	1	0	0	0	0	copy fasta	TXNRD3	chr3	126602050	126660124
TXN_chr9_110238810_110261507	0/0	t0001	420	330	43	60	194	7	26	copy fasta	TXN	chr9	110238810	110261507
TXN_chr9_110238810_110261507	1/1	t0002	420	83	26	16	14	8	17	copy fasta	TXN	chr9	110238810	110261507
TXN_chr9_110238810_110261507	0/0	t0003	420	26	21	3	0	0	2	copy fasta	TXN	chr9	110238810	110261507
TXN_chr9_110238810_110261507	0/0	t0004	420	13	0	2	8	2	1	copy fasta	TXN	chr9	110238810	110261507
TXN_chr9_110238810_110261507	0/0	t0005	420	6	6	0	0	0	0	copy fasta	TXN	chr9	110238810	110261507
TXN_chr9_110238810_110261507	0/0	t0006	420	3	0	0	3	0	0	copy fasta	TXN	chr9	110238810	110261507
TXN_chr9_110238810_110261507	0/0	t0007	420	2	2	0	0	0	0	copy fasta	TXN	chr9	110238810	110261507
TXN_chr9_110238810_110261507	0/0	t0008	420	2	0	1	0	1	0	copy fasta	TXN	chr9	110238810	110261507
TXN_chr9_110238810_110261507	0/0	t0009	420	1	0	0	1	0	0	copy fasta	TXN	chr9	110238810	110261507
TYK2_chr19_10345533_10385572	1/1	t0001	680	287	54	61	125	15	30	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	t0002	680	51	27	11	2	1	10	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	t0003	680	9	0	0	9	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	t0004	680	9	0	0	9	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	t0005	680	7	7	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	t0006	680	2	2	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	t0007	680	2	0	0	2	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	t0008	680	2	0	2	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	t0009	680	2	0	0	2	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	t0010	680	1	1	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	t0011	680	1	1	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572