JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TYK2_chr19_10345533_10385572	0/0	t0012	680	1	0	0	1	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	t0013	680	1	1	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYK2_chr19_10345533_10385572	0/0	t0014	680	1	1	0	0	0	0	copy fasta	TYK2	chr19	10345533	10385572
TYMP_chr22_50520752_50535012	1/1	t0001	138	408	97	75	174	16	44	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	t0002	138	1	0	1	0	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	t0003	138	1	1	0	0	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	t0004	138	1	0	0	1	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMP_chr22_50520752_50535012	0/0	t0005	138	1	0	0	1	0	0	copy fasta	TYMP	chr22	50520752	50535012
TYMS_chr18_652653_678578	0/0	t0001	666	101	16	8	63	3	11	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0002	672	92	6	29	46	2	9	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0003	651	92	22	27	21	9	13	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0004	666	48	12	3	32	0	1	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0005	666	40	3	4	29	0	4	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0006	666	23	1	2	19	0	1	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	1/1	t0007	672	22	6	3	8	0	3	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0008	645	21	6	4	5	0	6	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0009	645	15	3	0	8	2	2	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0010	666	7	7	0	0	0	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0011	671	5	5	0	0	0	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0012	666	3	2	1	0	0	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0013	645	3	3	0	0	0	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0014	700	2	0	0	0	2	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0015	728	2	0	0	2	0	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0016	645	2	2	0	0	0	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0017	666	1	1	0	0	0	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0018	672	1	1	0	0	0	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0019	666	1	0	1	0	0	0	copy fasta	TYMS	chr18	652653	678578
TYMS_chr18_652653_678578	0/0	t0020	756	1	0	0	1	0	0	copy fasta	TYMS	chr18	652653	678578
TYRO3_chr15_41554212_41588589	0/0	t0001	5375	43	4	6	26	0	7	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0002	5372	35	1	9	17	0	8	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/1	t0003	5375	34	13	10	7	1	2	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0004	5374	31	1	5	25	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0005	5376	25	10	3	9	1	2	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0006	5373	20	1	9	6	3	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0007	5373	16	2	3	0	2	9	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0008	5372	8	8	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0009	5373	8	7	1	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0010	5372	6	4	1	0	1	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0011	5359	5	5	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	1/0	t0012	5360	4	0	0	2	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0013	5359	4	4	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0014	5373	4	0	4	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0015	5374	3	1	0	0	0	2	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0016	5371	3	0	2	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0017	5374	3	2	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0018	5375	3	1	1	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0019	5376	2	0	0	2	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0020	5373	2	1	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0021	5376	2	1	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0022	5377	2	0	2	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589