JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TYRO3_chr15_41554212_41588589	0/0	t0023	5373	2	1	0	0	1	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0024	5374	2	0	2	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0025	5371	2	0	0	2	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0026	5361	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0027	5360	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0028	5374	1	0	1	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0029	5373	1	0	0	0	1	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0030	5375	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0031	5389	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0032	5373	1	0	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0033	5375	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0034	5373	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0035	5374	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0036	5374	1	0	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0037	5374	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0038	5375	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0039	5376	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0040	5374	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0041	5374	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0042	5375	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0043	5375	1	0	1	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0044	5373	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0045	5374	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0046	5373	1	0	1	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0047	5375	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0048	5375	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0049	5377	1	0	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0050	5374	1	0	1	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0051	5374	1	0	1	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0052	5359	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0053	5360	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0054	5360	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0055	5361	1	0	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0056	5360	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0057	5376	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0058	5376	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0059	5370	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0060	5373	1	0	1	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0061	5374	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0062	5375	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0063	5373	1	0	0	0	1	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0064	5374	1	0	1	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0065	5373	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0066	5371	1	0	1	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0067	5371	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0068	5373	1	0	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0069	5360	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0070	5360	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0071	5375	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0072	5374	1	0	0	0	1	0	copy fasta	TYRO3	chr15	41554212	41588589