JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TYRO3_chr15_41554212_41588589	0/0	t0073	5376	1	0	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0074	5374	1	0	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0075	5373	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0076	5371	1	0	0	0	0	1	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0077	5375	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0078	5360	1	0	0	1	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0079	5374	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYRO3_chr15_41554212_41588589	0/0	t0080	5374	1	1	0	0	0	0	copy fasta	TYRO3	chr15	41554212	41588589
TYROBP_chr19_35899403_35913295	1/1	t0001	234	345	64	80	141	17	41	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	t0002	234	53	19	0	28	1	5	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	t0003	234	4	4	0	0	0	0	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	t0004	234	2	2	0	0	0	0	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	t0005	234	1	0	0	1	0	0	copy fasta	TYROBP	chr19	35899403	35913295
TYROBP_chr19_35899403_35913295	0/0	t0006	234	1	1	0	0	0	0	copy fasta	TYROBP	chr19	35899403	35913295
TYRP1_chr9_12688385_12715285	0/0	t0001	1279	270	57	39	150	3	21	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	1/0	t0002	1283	59	2	5	31	3	17	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/1	t0003	1278	53	4	31	0	7	10	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0004	1279	21	21	0	0	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0005	1279	11	0	0	11	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0006	1277	10	2	6	0	2	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0007	1282	3	0	0	2	1	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0008	1279	2	0	0	2	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0009	1282	2	0	0	2	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0010	1283	1	0	0	1	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0011	1277	1	1	0	0	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0012	1277	1	1	0	0	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0013	1277	1	0	1	0	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0014	1278	1	1	0	0	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0015	1282	1	1	0	0	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYRP1_chr9_12688385_12715285	0/0	t0016	1279	1	0	0	1	0	0	copy fasta	TYRP1	chr9	12688385	12715285
TYR_chr11_89172875_89300759	1/1	t0001	473	305	88	44	125	12	34	copy fasta	TYR	chr11	89172875	89300759
TYR_chr11_89172875_89300759	0/0	t0002	473	1	0	0	1	0	0	copy fasta	TYR	chr11	89172875	89300759
TYSND1_chr10_70132981_70151700	0/1	t0001	2057	151	20	35	75	3	17	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0002	2058	117	37	21	54	0	5	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0003	2058	42	4	13	0	10	15	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	1/0	t0004	2058	29	9	4	6	2	7	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0005	2057	27	2	2	22	1	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0006	2058	13	0	2	9	1	1	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0007	2058	8	5	3	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0008	2057	8	0	0	8	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0009	2057	7	0	0	7	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0010	2057	5	0	0	5	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0011	2059	5	3	0	2	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0012	2057	5	5	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0013	2059	4	2	1	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0014	2057	3	0	0	3	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0015	2057	3	0	0	3	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0016	2058	3	3	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0017	2058	3	0	0	1	0	2	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0018	2058	2	2	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700