JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TYSND1_chr10_70132981_70151700	0/0	t0019	2058	2	0	1	0	0	1	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0020	2057	2	0	0	2	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0021	2058	2	0	0	2	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0022	2059	2	1	1	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0023	2057	1	0	0	0	1	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0024	2058	1	0	0	0	0	1	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0025	2058	1	1	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0026	2057	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0027	2058	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0028	2057	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0029	2057	1	1	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0030	2057	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0031	2058	1	0	0	0	0	1	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0032	2058	1	0	1	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0033	2058	1	1	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0034	2058	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0035	2058	1	0	0	1	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0036	2058	1	1	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYSND1_chr10_70132981_70151700	0/0	t0037	2057	1	1	0	0	0	0	copy fasta	TYSND1	chr10	70132981	70151700
TYW1B_chr7_72569513_72833200	1/1	t0001	1111	277	68	44	128	7	28	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	t0002	1111	3	0	0	0	1	2	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	t0003	1111	2	0	0	0	0	2	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	t0004	1111	1	0	1	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	t0005	1111	1	0	1	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	t0006	1111	1	1	0	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1B_chr7_72569513_72833200	0/0	t0007	1111	1	1	0	0	0	0	copy fasta	TYW1B	chr7	72569513	72833200
TYW1_chr7_66991833_67244514	1/1	t0001	1132	215	39	38	98	9	29	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	t0002	1132	56	33	15	1	1	6	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	t0003	1132	48	0	9	39	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	t0004	1132	24	0	7	12	0	5	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	t0005	1132	11	11	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	t0006	1132	2	0	0	2	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	t0007	1132	2	2	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	t0008	1132	1	1	0	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	t0009	1132	1	0	0	1	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	t0010	1132	1	0	0	0	0	1	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	t0011	1132	1	0	1	0	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	t0012	1132	1	0	0	1	0	0	copy fasta	TYW1	chr7	66991833	67244514
TYW1_chr7_66991833_67244514	0/0	t0013	1132	1	0	0	0	0	1	copy fasta	TYW1	chr7	66991833	67244514
TYW3_chr1_74728152_74771677	0/1	t0001	2658	96	17	16	54	1	7	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0002	2658	78	12	16	37	2	11	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	1/0	t0003	2658	40	27	7	0	3	2	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0004	2658	40	8	4	19	1	8	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0005	2658	37	3	21	2	5	6	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0006	2659	14	0	0	14	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0007	2658	10	10	0	0	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0008	2659	6	0	0	6	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0009	2658	2	0	2	0	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0010	2658	2	0	0	2	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0011	2658	1	0	0	0	0	1	copy fasta	TYW3	chr1	74728152	74771677