JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TYW3_chr1_74728152_74771677	0/0	t0012	2658	1	1	0	0	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0013	2658	1	0	1	0	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0014	2658	1	1	0	0	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0015	2658	1	0	0	0	0	1	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0016	2658	1	1	0	0	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW3_chr1_74728152_74771677	0/0	t0017	2658	1	0	1	0	0	0	copy fasta	TYW3	chr1	74728152	74771677
TYW5_chr2_199923913_199960491	0/1	t0001	4182	101	20	19	42	7	12	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0002	4185	49	3	16	27	1	2	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0003	4183	30	0	5	22	0	3	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0004	4175	23	0	3	19	0	1	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0005	4174	21	0	0	21	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0006	4183	18	1	7	6	2	2	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0007	4181	12	0	1	10	0	1	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0008	4184	11	8	2	1	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	1/0	t0009	4176	10	6	3	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0010	4182	10	0	0	9	1	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0011	4183	7	1	1	5	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0012	4188	7	6	1	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0013	4186	7	0	3	0	0	4	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0014	4175	5	3	0	2	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0015	4179	5	0	0	5	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0016	4181	5	3	0	0	0	2	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0017	4186	5	1	2	2	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0018	4185	5	0	5	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0019	4183	4	2	2	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0020	4184	3	0	0	3	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0021	4184	3	3	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0022	4181	3	0	0	2	0	1	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0023	4183	3	3	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0024	4183	2	2	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0025	4182	2	2	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0026	4186	2	2	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0027	4185	2	2	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0028	4184	2	0	0	1	0	1	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0029	4183	1	0	0	1	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0030	4175	1	0	0	0	0	1	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0031	4175	1	1	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0032	4174	1	0	0	0	1	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0033	4174	1	1	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0034	4182	1	0	0	1	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0035	4180	1	0	0	0	0	1	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0036	4179	1	0	0	1	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0037	4180	1	0	0	1	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0038	4184	1	0	0	0	0	1	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0039	4181	1	1	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0040	4184	1	1	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0041	4182	1	0	0	1	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0042	4181	1	0	0	1	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0043	4182	1	1	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0044	4186	1	0	1	0	0	0	copy fasta	TYW5	chr2	199923913	199960491