JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TYW5_chr2_199923913_199960491	0/0	t0045	4187	1	0	1	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0046	4187	1	1	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0047	4186	1	1	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0048	4185	1	1	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0049	4186	1	1	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0050	4184	1	0	0	1	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0051	4182	1	1	0	0	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0052	4183	1	0	0	1	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0053	4185	1	0	0	0	0	1	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0054	4184	1	0	0	1	0	0	copy fasta	TYW5	chr2	199923913	199960491
TYW5_chr2_199923913_199960491	0/0	t0055	4182	1	0	0	0	0	1	copy fasta	TYW5	chr2	199923913	199960491
U2AF1L4_chr19_35737527_35750418	1/1	t0001	220	297	75	66	116	11	27	copy fasta	U2AF1L4	chr19	35737527	35750418
U2AF1L4_chr19_35737527_35750418	0/0	t0002	220	75	18	6	31	3	17	copy fasta	U2AF1L4	chr19	35737527	35750418
U2AF1L4_chr19_35737527_35750418	0/0	t0003	220	29	0	0	29	0	0	copy fasta	U2AF1L4	chr19	35737527	35750418
U2AF1L4_chr19_35737527_35750418	0/0	t0004	220	1	1	0	0	0	0	copy fasta	U2AF1L4	chr19	35737527	35750418
U2AF1L4_chr19_35737527_35750418	0/0	t0005	220	1	0	1	0	0	0	copy fasta	U2AF1L4	chr19	35737527	35750418
U2AF1L4_chr19_35737527_35750418	0/0	t0006	220	1	0	1	0	0	0	copy fasta	U2AF1L4	chr19	35737527	35750418
U2AF1_chr21_43087956_43112570	0/0	t0001	223	147	18	11	89	6	23	copy fasta	U2AF1	chr21	43087956	43112570
U2AF1_chr21_43087956_43112570	0/0	t0002	223	3	0	1	1	0	1	copy fasta	U2AF1	chr21	43087956	43112570
U2AF2_chr19_55650035_55679716	0/0	t0001	719	184	27	50	75	10	22	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	t0002	711	95	41	8	38	2	6	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	1/0	t0003	719	85	21	17	34	2	10	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/1	t0004	711	14	0	2	5	2	4	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	t0005	715	4	4	0	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	t0006	719	3	2	1	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	t0007	719	2	2	0	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	t0008	711	1	1	0	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	t0009	711	1	0	0	1	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	t0010	719	1	0	0	1	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	t0011	719	1	0	1	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	t0012	719	1	0	1	0	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	t0013	719	1	0	0	1	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2AF2_chr19_55650035_55679716	0/0	t0014	719	1	0	0	1	0	0	copy fasta	U2AF2	chr19	55650035	55679716
U2SURP_chr3_142996570_143065725	0/0	t0001	4337	111	29	21	49	2	10	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0002	4337	93	13	18	49	4	9	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	1/1	t0003	4335	80	5	16	43	4	10	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0004	4337	24	14	0	10	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0005	4337	14	12	2	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0006	4335	9	2	1	1	0	5	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0007	4338	8	1	3	0	2	2	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0008	4337	7	0	3	0	0	4	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0009	4335	5	0	0	5	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0010	4335	4	0	0	3	0	1	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0011	4335	4	1	0	2	0	1	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0012	4335	2	1	1	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0013	4337	2	1	1	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0014	4335	2	2	0	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0015	4335	2	2	0	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0016	4337	1	1	0	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0017	4335	1	0	1	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725