JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
U2SURP_chr3_142996570_143065725	0/0	t0018	4335	1	1	0	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0019	4336	1	0	1	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0020	4337	1	0	0	1	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0021	4337	1	0	0	1	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0022	4337	1	1	0	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0023	4337	1	0	0	1	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0024	4337	1	1	0	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0025	4387	1	0	0	1	0	0	copy fasta	U2SURP	chr3	142996570	143065725
U2SURP_chr3_142996570_143065725	0/0	t0026	4335	1	1	0	0	0	0	copy fasta	U2SURP	chr3	142996570	143065725
UACA_chr15_70649554_70768558	1/1	t0001	2654	192	27	31	114	3	15	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0002	2654	43	10	7	12	4	10	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0003	2654	41	27	5	5	3	1	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0004	2655	5	4	1	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0005	2654	5	5	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0006	2654	4	4	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0007	2655	2	1	0	0	0	1	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0008	2653	2	0	2	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0009	2654	1	0	0	1	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0010	2654	1	0	0	0	0	1	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0011	2654	1	0	0	1	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0012	2654	1	0	0	0	0	1	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0013	2654	1	0	1	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0014	2654	1	1	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0015	2654	1	0	1	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0016	2654	1	0	0	1	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0017	2654	1	0	0	0	0	1	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0018	2654	1	1	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0019	2654	1	1	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0020	2654	1	1	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0021	2655	1	0	0	0	0	1	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0022	2653	1	0	0	0	0	1	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0023	2654	1	1	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UACA_chr15_70649554_70768558	0/0	t0024	2655	1	1	0	0	0	0	copy fasta	UACA	chr15	70649554	70768558
UAP1L1_chr9_137072517_137089538	0/1	t0001	1826	326	48	70	149	16	42	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0002	1826	27	25	1	1	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0003	1826	5	5	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0004	1826	3	3	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0005	1826	3	2	1	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0006	1826	2	0	0	0	0	2	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0007	1826	2	0	0	0	0	2	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	1/0	t0008	1826	2	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0009	1826	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0010	1826	1	0	0	1	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0011	1826	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0012	1826	1	0	1	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0013	1826	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0014	1826	1	0	1	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0015	1826	1	1	0	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0016	1826	1	0	1	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0017	1826	1	0	0	1	0	0	copy fasta	UAP1L1	chr9	137072517	137089538