JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UAP1L1_chr9_137072517_137089538	0/0	t0018	1826	1	0	0	1	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0019	1826	1	0	0	1	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1L1_chr9_137072517_137089538	0/0	t0020	1826	1	0	1	0	0	0	copy fasta	UAP1L1	chr9	137072517	137089538
UAP1_chr1_162556722_162606240	0/1	t0001	1991	251	46	58	108	8	30	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	1/0	t0002	1991	106	35	14	36	6	14	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0003	1991	15	0	0	15	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0004	1991	14	0	0	14	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0005	1990	5	1	3	0	1	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0006	1990	3	0	0	3	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0007	1991	3	3	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0008	1991	2	0	0	0	0	2	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0009	1991	2	2	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0010	1991	2	0	0	2	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0011	1991	1	0	0	0	0	1	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0012	1991	1	0	1	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0013	1991	1	0	0	1	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0014	2038	1	0	0	1	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0015	1991	1	0	0	1	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0016	1990	1	1	0	0	0	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0017	1991	1	0	0	0	1	0	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0018	1991	1	0	0	0	0	1	copy fasta	UAP1	chr1	162556722	162606240
UAP1_chr1_162556722_162606240	0/0	t0019	1991	1	0	0	1	0	0	copy fasta	UAP1	chr1	162556722	162606240
UBA1_chrX_47188829_47220128	1/1	t0001	396	280	78	46	118	7	29	copy fasta	UBA1	chrX	47188829	47220128
UBA1_chrX_47188829_47220128	0/0	t0002	396	1	0	0	0	0	1	copy fasta	UBA1	chrX	47188829	47220128
UBA2_chr19_34423381_34476251	0/0	t0001	2084	196	42	36	84	11	23	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	1/1	t0002	2083	70	21	12	19	4	12	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0003	2084	21	5	13	0	0	3	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0004	2085	8	7	0	1	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0005	2083	4	0	0	4	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0006	2084	2	1	0	1	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0007	2085	2	2	0	0	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0008	2084	2	2	0	0	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0009	2084	2	2	0	0	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0010	2083	1	1	0	0	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0011	2083	1	0	0	0	0	1	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0012	2084	1	0	1	0	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0013	2084	1	0	0	1	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0014	2084	1	0	0	1	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0015	2084	1	0	0	1	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0016	2084	1	0	0	0	0	1	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0017	2042	1	1	0	0	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0018	2084	1	0	0	1	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0019	2084	1	1	0	0	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0020	2083	1	0	0	1	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0021	2083	1	1	0	0	0	0	copy fasta	UBA2	chr19	34423381	34476251
UBA2_chr19_34423381_34476251	0/0	t0022	2084	1	0	0	0	1	0	copy fasta	UBA2	chr19	34423381	34476251
UBA3_chr3_69049730_69085365	1/1	t0001	720	406	86	74	186	16	42	copy fasta	UBA3	chr3	69049730	69085365
UBA3_chr3_69049730_69085365	0/0	t0002	719	5	5	0	0	0	0	copy fasta	UBA3	chr3	69049730	69085365
UBA3_chr3_69049730_69085365	0/0	t0003	720	4	0	0	4	0	0	copy fasta	UBA3	chr3	69049730	69085365
UBA3_chr3_69049730_69085365	0/0	t0004	720	2	0	0	2	0	0	copy fasta	UBA3	chr3	69049730	69085365