JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBA3_chr3_69049730_69085365	0/0	t0005	720	1	1	0	0	0	0	copy fasta	UBA3	chr3	69049730	69085365
UBA3_chr3_69049730_69085365	0/0	t0006	720	1	1	0	0	0	0	copy fasta	UBA3	chr3	69049730	69085365
UBA3_chr3_69049730_69085365	0/0	t0007	720	1	1	0	0	0	0	copy fasta	UBA3	chr3	69049730	69085365
UBA52_chr19_18566857_18582550	1/0	t0001	2462	103	3	24	51	4	20	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0002	2464	70	0	19	42	4	5	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0003	2465	52	0	4	37	2	9	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0004	2463	19	15	2	0	2	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0005	2465	15	3	6	3	2	1	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0006	2466	14	0	2	10	0	2	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0007	2463	13	0	2	10	0	1	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0008	2462	10	10	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0009	2463	8	8	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0010	2462	7	4	3	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0011	2462	7	0	2	3	0	2	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0012	2463	6	5	1	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0013	2465	5	5	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0014	2461	5	5	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0015	2462	4	4	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0016	2463	4	4	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0017	2464	3	0	3	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0018	2466	3	1	0	2	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0019	2464	3	0	3	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0020	2466	3	2	1	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0021	2455	3	3	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0022	2456	3	3	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0023	2463	2	2	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0024	2463	2	0	0	1	0	1	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0025	2462	2	0	2	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0026	2463	2	0	1	1	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0027	2463	2	0	0	2	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0028	2464	2	0	0	0	2	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0029	2466	2	2	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0030	2463	2	0	0	0	0	2	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0031	2464	2	2	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0032	2467	2	2	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0033	2466	1	0	0	1	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0034	2461	1	0	0	0	0	1	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0035	2462	1	0	0	1	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0036	2462	1	0	0	0	0	1	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0037	2462	1	0	0	1	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0038	2464	1	0	0	1	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0039	2462	1	0	0	0	0	1	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0040	2462	1	0	1	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0041	2427	1	0	0	1	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0042	2465	1	0	0	1	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0043	2464	1	0	1	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0044	2465	1	0	0	1	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0045	2466	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/1	t0046	2465	1	0	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0047	2465	1	0	1	0	0	0	copy fasta	UBA52	chr19	18566857	18582550