JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBA52_chr19_18566857_18582550	0/0	t0048	2462	1	0	1	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0049	2466	1	0	1	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0050	2466	1	0	0	1	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0051	2467	1	0	0	1	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0052	2462	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0053	2464	1	0	0	1	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0054	2461	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0055	2463	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0056	2462	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0057	2463	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0058	2464	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0059	2463	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0060	2464	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0061	2465	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0062	2465	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0063	2466	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA52_chr19_18566857_18582550	0/0	t0064	2463	1	1	0	0	0	0	copy fasta	UBA52	chr19	18566857	18582550
UBA5_chr3_132655329_132684794	0/0	t0001	3478	112	24	20	49	7	12	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0002	3478	105	11	4	77	5	8	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0003	3478	31	1	6	21	0	3	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0004	3478	17	16	1	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0005	3478	15	14	1	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0006	3478	8	0	0	7	0	1	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0007	3482	7	4	3	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0008	3478	6	6	0	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0009	3478	6	0	2	1	1	2	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0010	3478	6	5	1	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0011	3478	4	2	2	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0012	3478	3	3	0	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0013	3478	2	0	0	0	0	2	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0014	3478	1	0	0	1	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0015	3478	1	1	0	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0016	3478	1	0	0	1	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0017	3478	1	0	1	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0018	3478	1	0	1	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0019	3490	1	1	0	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0020	3478	1	1	0	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0021	3478	1	0	0	0	1	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0022	3478	1	1	0	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0023	3478	1	1	0	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0024	3478	1	0	0	1	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0025	3478	1	0	0	1	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0026	3478	1	0	0	1	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA5_chr3_132655329_132684794	0/0	t0027	3478	1	1	0	0	0	0	copy fasta	UBA5	chr3	132655329	132684794
UBA6_chr4_67607652_67706155	0/0	t0001	6384	98	26	19	37	5	11	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0002	6375	38	2	10	19	3	4	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0003	6382	34	11	7	11	2	3	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/1	t0004	6384	24	0	4	18	0	1	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	1/0	t0005	6382	19	9	7	1	1	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0006	6376	14	0	0	13	0	1	copy fasta	UBA6	chr4	67607652	67706155