JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBA6_chr4_67607652_67706155	0/0	t0007	6382	10	0	3	7	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0008	6382	8	0	0	8	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0009	6383	7	6	1	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0010	6383	7	0	2	5	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0011	6383	5	5	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0012	6383	4	4	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0013	6384	4	4	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0014	6374	3	1	1	0	1	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0015	6381	3	0	3	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0016	6382	3	1	2	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0017	6382	3	0	2	0	1	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0018	6374	2	2	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0019	6375	2	0	0	2	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0020	6384	2	0	0	0	0	2	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0021	6384	2	0	0	0	0	2	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0022	6383	2	0	1	0	1	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0023	6384	2	0	0	0	0	2	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0024	6384	1	0	0	1	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0025	6375	1	0	0	0	0	1	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0026	6375	1	0	0	0	0	1	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0027	6384	1	0	1	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0028	6384	1	0	0	1	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0029	6384	1	0	0	1	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0030	6384	1	0	0	1	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0031	6384	1	0	1	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0032	6384	1	0	0	1	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0033	6384	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0034	6384	1	0	0	1	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0035	6382	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0036	6385	1	0	0	1	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0037	6387	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0038	6383	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0039	6383	1	0	0	0	0	1	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0040	6382	1	0	0	0	0	1	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0041	6382	1	0	0	1	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0042	6382	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0043	6382	1	0	1	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0044	6382	1	0	1	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0045	6384	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0046	6385	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0047	6383	1	0	0	1	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0048	6383	1	0	0	1	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0049	6381	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0050	6383	1	0	0	1	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA6_chr4_67607652_67706155	0/0	t0051	6374	1	1	0	0	0	0	copy fasta	UBA6	chr4	67607652	67706155
UBA7_chr3_49800209_49818953	1/0	t0001	266	205	35	46	83	12	28	copy fasta	UBA7	chr3	49800209	49818953
UBA7_chr3_49800209_49818953	0/1	t0002	275	139	53	22	39	4	20	copy fasta	UBA7	chr3	49800209	49818953
UBAC1_chr9_135927969_135966373	0/1	t0001	643	175	38	44	68	8	16	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	1/0	t0002	643	127	47	14	52	1	12	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	t0003	640	62	1	8	38	3	12	copy fasta	UBAC1	chr9	135927969	135966373