JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBAC1_chr9_135927969_135966373	0/0	t0004	640	4	0	2	0	0	2	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	t0005	643	4	3	1	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	t0006	634	3	3	0	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	t0007	643	2	2	0	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC1_chr9_135927969_135966373	0/0	t0008	640	1	0	1	0	0	0	copy fasta	UBAC1	chr9	135927969	135966373
UBAC2_chr13_99195854_99391504	0/1	t0001	1225	197	39	41	82	10	24	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	1/0	t0002	1225	98	29	13	46	3	6	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	t0003	1224	38	10	12	9	1	6	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	t0004	1225	17	0	0	17	0	0	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	t0005	1225	9	0	5	0	1	3	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	t0006	1225	8	0	0	8	0	0	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	t0007	1225	3	3	0	0	0	0	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	t0008	1225	3	0	0	2	1	0	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	t0009	1224	2	0	0	0	0	2	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	t0010	1225	1	0	0	0	0	1	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	t0011	1225	1	1	0	0	0	0	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	t0012	1225	1	0	0	1	0	0	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	t0013	1225	1	0	1	0	0	0	copy fasta	UBAC2	chr13	99195854	99391504
UBAC2_chr13_99195854_99391504	0/0	t0014	1224	1	0	0	1	0	0	copy fasta	UBAC2	chr13	99195854	99391504
UBALD1_chr16_4603884_4619888	0/1	t0001	841	298	65	52	134	7	39	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	t0002	841	27	25	2	0	0	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	t0003	841	3	3	0	0	0	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	t0004	841	2	0	0	2	0	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	t0005	841	2	0	2	0	0	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	t0006	841	2	0	2	0	0	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	t0007	841	1	1	0	0	0	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	1/0	t0008	841	1	0	0	0	0	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	t0009	841	1	0	0	0	1	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	t0010	841	1	0	0	0	0	1	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	t0011	841	1	1	0	0	0	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD1_chr16_4603884_4619888	0/0	t0012	841	1	1	0	0	0	0	copy fasta	UBALD1	chr16	4603884	4619888
UBALD2_chr17_76260348_76276298	0/0	t0001	938	148	14	19	96	3	16	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	1/1	t0002	952	102	14	29	40	4	13	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0003	952	50	23	13	3	3	8	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0004	951	38	28	3	6	0	1	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0005	953	35	2	6	20	3	4	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0006	951	13	11	2	0	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0007	938	5	0	0	5	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0008	953	4	0	0	0	1	3	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0009	952	3	0	0	3	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0010	952	3	3	0	0	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0011	952	1	0	0	0	0	1	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0012	952	1	0	1	0	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0013	952	1	0	0	1	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0014	938	1	0	0	1	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0015	953	1	0	1	0	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0016	938	1	0	0	1	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0017	938	1	0	1	0	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0018	938	1	1	0	0	0	0	copy fasta	UBALD2	chr17	76260348	76276298
UBALD2_chr17_76260348_76276298	0/0	t0019	950	1	0	1	0	0	0	copy fasta	UBALD2	chr17	76260348	76276298