JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBAP1L_chr15_65087760_65120200	0/1	t0001	563	156	42	38	51	6	18	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	1/0	t0002	562	57	41	10	3	0	2	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	t0003	563	11	1	10	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	t0004	562	7	7	0	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1L_chr15_65087760_65120200	0/0	t0005	563	1	1	0	0	0	0	copy fasta	UBAP1L	chr15	65087760	65120200
UBAP1_chr9_34174043_34257523	0/1	t0001	1193	153	26	27	76	5	18	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	t0002	1193	57	2	11	35	5	4	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	1/0	t0003	1197	55	26	12	7	3	6	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	t0004	1193	41	5	18	8	3	7	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	t0005	1193	24	23	1	0	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	t0006	1197	4	2	1	0	0	1	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	t0007	1197	2	2	0	0	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	t0008	1193	1	1	0	0	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	t0009	1193	1	0	0	1	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	t0010	1197	1	1	0	0	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	t0011	1193	1	0	1	0	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	t0012	1197	1	0	1	0	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP1_chr9_34174043_34257523	0/0	t0013	1193	1	0	0	1	0	0	copy fasta	UBAP1	chr9	34174043	34257523
UBAP2L_chr1_154215955_154275847	1/0	t0001	614	148	23	33	66	6	19	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	t0002	616	82	0	15	57	2	8	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	t0003	614	51	48	1	0	0	2	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/1	t0004	610	28	7	7	5	2	6	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	t0005	617	10	0	3	6	0	1	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	t0006	615	10	1	2	6	0	1	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	t0007	613	7	7	0	0	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	t0008	615	5	4	1	0	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	t0009	614	3	1	0	1	0	1	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	t0010	614	2	0	0	2	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	t0011	614	1	0	0	0	0	1	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	t0012	616	1	1	0	0	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	t0013	614	1	0	0	1	0	0	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2L_chr1_154215955_154275847	0/0	t0014	571	1	0	0	0	0	1	copy fasta	UBAP2L	chr1	154215955	154275847
UBAP2_chr9_33916693_34053887	1/1	t0001	916	188	31	35	87	9	24	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	t0002	916	90	26	25	21	3	15	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	t0003	915	58	22	4	30	0	2	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	t0004	915	14	1	4	0	4	5	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	t0005	915	2	2	0	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	t0006	916	1	0	0	1	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	t0007	916	1	1	0	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	t0008	915	1	1	0	0	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBAP2_chr9_33916693_34053887	0/0	t0009	916	1	0	0	1	0	0	copy fasta	UBAP2	chr9	33916693	34053887
UBASH3A_chr21_42398902_42452684	1/1	t0001	535	247	36	57	112	11	29	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	t0002	535	122	25	21	57	4	15	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	t0003	535	19	17	2	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	t0004	533	16	15	1	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	t0005	534	3	0	1	1	1	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3A_chr21_42398902_42452684	0/0	t0006	535	1	1	0	0	0	0	copy fasta	UBASH3A	chr21	42398902	42452684
UBASH3B_chr11_122650722_122819473	0/0	t0001	4916	53	14	11	15	4	9	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/1	t0002	4916	28	5	12	4	1	5	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0003	4916	25	3	0	19	1	2	copy fasta	UBASH3B	chr11	122650722	122819473