JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBASH3B_chr11_122650722_122819473	0/0	t0004	4916	23	0	3	20	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0005	4915	21	1	3	12	0	5	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0006	4913	14	12	2	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0007	4916	13	0	4	9	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0008	4915	12	0	4	5	0	3	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0009	4910	11	1	3	2	2	3	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0010	4916	10	4	2	3	0	1	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0011	4915	6	0	2	1	3	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0012	4913	5	5	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0013	4915	4	1	2	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0014	4910	4	0	3	0	1	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0015	4913	3	0	1	2	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0016	4910	3	3	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	1/0	t0017	4916	3	0	2	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0018	4916	3	3	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0019	4910	3	3	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0020	4916	3	3	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0021	4916	2	2	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0022	4913	2	2	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0023	4913	2	2	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0024	4913	2	1	1	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0025	4913	2	2	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0026	4916	1	0	0	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0027	4913	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0028	4913	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0029	4913	1	0	0	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0030	4913	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0031	4913	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0032	4913	1	0	0	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0033	4913	1	0	0	0	1	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0034	4916	1	0	0	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0035	4916	1	0	0	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0036	4916	1	0	0	0	1	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0037	4910	1	0	0	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0038	4916	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0039	4916	1	0	0	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0040	4915	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0041	4915	1	0	0	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0042	4915	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0043	4913	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0044	4916	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0045	4916	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0046	4915	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0047	4913	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0048	4913	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0049	4913	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0050	4913	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0051	4910	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0052	4916	1	0	0	1	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0053	4916	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473