Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C10orf62_chr10_97584721_97595934	0/0	t0005	543	1	1	0	0	0	0	copy fasta	C10orf62	chr10	97584721	97595934
C10orf62_chr10_97584721_97595934	0/0	t0006	543	1	1	0	0	0	0	copy fasta	C10orf62	chr10	97584721	97595934
C10orf67_chr10_23197696_23349797	1/1	t0001	1501	223	39	37	100	12	33	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	t0002	1501	58	22	21	2	2	11	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	t0003	1501	20	2	0	14	0	4	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	t0004	1501	10	9	1	0	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	t0005	1501	3	3	0	0	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	t0006	1500	3	2	1	0	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	t0007	1501	2	2	0	0	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	t0008	1501	2	2	0	0	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	t0009	1501	1	1	0	0	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	t0010	1501	1	0	1	0	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	t0011	1501	1	0	0	1	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	t0012	1501	1	0	1	0	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf67_chr10_23197696_23349797	0/0	t0013	1501	1	0	0	1	0	0	copy fasta	C10orf67	chr10	23197696	23349797
C10orf71_chr10_49294170_49332492	0/0	t0001	963	48	6	12	22	1	7	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0002	957	47	8	7	30	1	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0003	963	40	0	8	31	0	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0004	965	36	8	5	14	3	6	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0005	961	35	15	8	8	1	3	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0006	959	25	9	2	13	0	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0007	953	24	0	7	14	1	2	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0008	961	22	0	4	17	0	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	1/0	t0009	951	17	14	2	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0010	961	16	1	0	15	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0011	967	14	5	0	8	0	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0012	959	11	2	1	1	1	6	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0013	955	11	1	0	8	1	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0014	963	6	2	1	2	0	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0015	955	6	2	0	3	1	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0016	953	6	5	1	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/1	t0017	960	6	0	0	0	3	2	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0018	965	5	0	1	4	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0019	969	5	2	0	2	0	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0020	965	5	1	1	1	0	2	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0021	959	4	0	1	2	0	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0022	957	3	0	0	3	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0023	959	3	3	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0024	971	2	0	0	2	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0025	955	2	2	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0026	949	2	1	1	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0027	949	2	2	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0028	963	2	0	2	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0029	958	2	2	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0030	967	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0031	964	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0032	977	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0033	969	1	0	0	1	0	0	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0034	967	1	0	0	0	0	1	copy fasta	C10orf71	chr10	49294170	49332492
C10orf71_chr10_49294170_49332492	0/0	t0035	959	1	1	0	0	0	0	copy fasta	C10orf71	chr10	49294170	49332492