JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBASH3B_chr11_122650722_122819473	0/0	t0054	4910	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0055	4916	1	0	0	0	0	1	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0056	4915	1	0	0	0	0	1	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0057	4915	1	0	1	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBASH3B_chr11_122650722_122819473	0/0	t0058	4915	1	1	0	0	0	0	copy fasta	UBASH3B	chr11	122650722	122819473
UBB_chr17_16376091_16387740	1/1	t0001	244	333	78	66	142	9	36	copy fasta	UBB	chr17	16376091	16387740
UBB_chr17_16376091_16387740	0/0	t0002	244	8	7	1	0	0	0	copy fasta	UBB	chr17	16376091	16387740
UBB_chr17_16376091_16387740	0/0	t0003	244	4	4	0	0	0	0	copy fasta	UBB	chr17	16376091	16387740
UBB_chr17_16376091_16387740	0/0	t0004	242	3	0	3	0	0	0	copy fasta	UBB	chr17	16376091	16387740
UBB_chr17_16376091_16387740	0/0	t0005	244	2	0	0	0	0	2	copy fasta	UBB	chr17	16376091	16387740
UBB_chr17_16376091_16387740	0/0	t0006	244	1	1	0	0	0	0	copy fasta	UBB	chr17	16376091	16387740
UBB_chr17_16376091_16387740	0/0	t0007	244	1	0	0	0	1	0	copy fasta	UBB	chr17	16376091	16387740
UBC_chr12_124906646_124919650	0/1	t0001	136	157	21	49	42	16	28	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	1/0	t0002	136	145	39	12	88	0	5	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	t0003	136	106	0	13	81	1	11	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	t0004	136	13	13	0	0	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	t0005	136	12	9	1	2	0	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	t0006	136	11	6	3	0	0	2	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	t0007	136	1	0	0	0	1	0	copy fasta	UBC	chr12	124906646	124919650
UBC_chr12_124906646_124919650	0/0	t0008	136	1	0	0	1	0	0	copy fasta	UBC	chr12	124906646	124919650
UBD_chr6_29550515_29564732	0/1	t0001	397	326	68	52	159	12	34	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	t0002	397	131	26	29	62	4	10	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	t0003	397	2	0	2	0	0	0	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	t0004	397	2	1	1	0	0	0	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	t0005	397	1	1	0	0	0	0	copy fasta	UBD	chr6	29550515	29564732
UBD_chr6_29550515_29564732	0/0	t0006	397	1	0	0	1	0	0	copy fasta	UBD	chr6	29550515	29564732
UBE2A_chrX_119569563_119589423	1/0	t0001	1318	313	71	61	140	11	29	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/0	t0002	1318	5	5	0	0	0	0	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/0	t0003	1318	2	2	0	0	0	0	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/0	t0004	1314	2	1	0	0	0	1	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/0	t0005	1318	2	0	2	0	0	0	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/0	t0006	1319	1	0	0	1	0	0	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/0	t0007	1318	1	0	0	0	0	1	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/0	t0008	1318	1	0	0	1	0	0	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/0	t0009	1309	1	0	0	1	0	0	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/0	t0010	1317	1	0	0	1	0	0	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/1	t0011	1318	1	0	0	0	0	0	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/0	t0012	1318	1	1	0	0	0	0	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/0	t0013	1314	1	0	0	1	0	0	copy fasta	UBE2A	chrX	119569563	119589423
UBE2A_chrX_119569563_119589423	0/0	t0014	1318	1	0	0	0	0	1	copy fasta	UBE2A	chrX	119569563	119589423
UBE2B_chr5_134366569_134397108	1/0	t0001	1783	209	65	38	72	11	22	copy fasta	UBE2B	chr5	134366569	134397108
UBE2B_chr5_134366569_134397108	0/1	t0002	1783	63	18	20	13	5	6	copy fasta	UBE2B	chr5	134366569	134397108
UBE2B_chr5_134366569_134397108	0/0	t0003	1783	6	5	1	0	0	0	copy fasta	UBE2B	chr5	134366569	134397108
UBE2B_chr5_134366569_134397108	0/0	t0004	1783	2	0	2	0	0	0	copy fasta	UBE2B	chr5	134366569	134397108
UBE2B_chr5_134366569_134397108	0/0	t0005	1783	1	0	1	0	0	0	copy fasta	UBE2B	chr5	134366569	134397108
UBE2B_chr5_134366569_134397108	0/0	t0006	1783	1	0	0	1	0	0	copy fasta	UBE2B	chr5	134366569	134397108
UBE2C_chr20_45807644_45821952	1/1	t0001	238	434	94	74	200	18	46	copy fasta	UBE2C	chr20	45807644	45821952
UBE2C_chr20_45807644_45821952	0/0	t0002	238	1	1	0	0	0	0	copy fasta	UBE2C	chr20	45807644	45821952
UBE2C_chr20_45807644_45821952	0/0	t0003	238	1	1	0	0	0	0	copy fasta	UBE2C	chr20	45807644	45821952
UBE2D1_chr10_58330006_58375748	0/1	t0001	2179	178	31	29	97	5	15	copy fasta	UBE2D1	chr10	58330006	58375748