JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2D1_chr10_58330006_58375748	1/0	t0002	2180	134	15	25	69	4	20	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0003	2178	23	18	5	0	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0004	2179	9	6	3	0	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0005	2182	7	5	2	0	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0006	2179	6	1	4	0	0	1	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0007	2180	5	0	0	5	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0008	2178	4	4	0	0	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0009	2179	3	2	0	1	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0010	2180	3	2	1	0	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0011	2179	2	2	0	0	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0012	2179	2	0	0	2	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0013	2179	2	2	0	0	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0014	2178	1	1	0	0	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0015	2180	1	0	1	0	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0016	2180	1	0	0	0	1	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0017	2182	1	0	1	0	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0018	2179	1	1	0	0	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0019	2180	1	0	0	0	0	1	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0020	2180	1	0	0	0	0	1	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0021	2180	1	0	0	1	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0022	2179	1	0	0	1	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0023	2180	1	0	0	1	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0024	2178	1	0	0	0	0	1	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0025	2169	1	0	0	1	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0026	2182	1	0	1	0	0	0	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D1_chr10_58330006_58375748	0/0	t0027	2178	1	0	0	0	0	1	copy fasta	UBE2D1	chr10	58330006	58375748
UBE2D2_chr5_139556339_139633434	1/1	t0001	2087	223	73	45	56	16	31	copy fasta	UBE2D2	chr5	139556339	139633434
UBE2D2_chr5_139556339_139633434	0/0	t0002	2087	1	0	0	0	0	1	copy fasta	UBE2D2	chr5	139556339	139633434
UBE2D2_chr5_139556339_139633434	0/0	t0003	2087	1	1	0	0	0	0	copy fasta	UBE2D2	chr5	139556339	139633434
UBE2D2_chr5_139556339_139633434	0/0	t0004	2087	1	0	1	0	0	0	copy fasta	UBE2D2	chr5	139556339	139633434
UBE2D3_chr4_102789383_102832551	0/0	t0001	3290	185	46	30	85	6	18	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	1/0	t0002	3286	135	10	22	74	8	20	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0003	3290	10	10	0	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0004	3291	9	8	1	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0005	3286	3	1	2	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0006	3290	3	0	0	3	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0007	3290	2	0	1	1	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0008	3290	2	2	0	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0009	3290	1	1	0	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0010	3290	1	1	0	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0011	3286	1	0	0	0	0	1	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0012	3286	1	0	1	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0013	3290	1	1	0	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0014	3286	1	0	0	1	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0015	3290	1	1	0	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0016	3290	1	0	0	1	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0017	3290	1	0	0	1	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0018	3291	1	0	0	0	0	1	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0019	3290	1	1	0	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0020	3286	1	0	0	0	0	1	copy fasta	UBE2D3	chr4	102789383	102832551