JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2D3_chr4_102789383_102832551	0/0	t0021	3286	1	0	0	1	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0022	3290	1	1	0	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0023	3286	1	0	0	0	0	1	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0024	3286	1	0	0	1	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/1	t0025	3290	1	0	0	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0026	3290	1	1	0	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D3_chr4_102789383_102832551	0/0	t0027	3286	1	0	1	0	0	0	copy fasta	UBE2D3	chr4	102789383	102832551
UBE2D4_chr7_43921436_43961136	1/0	t0001	3539	75	4	15	38	4	13	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0002	3537	53	27	9	14	2	1	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0003	3536	50	0	5	41	0	4	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0004	3536	29	9	10	2	2	6	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0005	3536	23	1	1	20	0	1	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/1	t0006	3540	20	0	6	11	1	1	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0007	3539	16	16	0	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0008	3538	13	5	1	7	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0009	3538	12	4	3	4	0	1	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0010	3540	10	2	3	4	0	1	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0011	3538	8	0	6	0	0	2	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0012	3538	7	1	3	0	1	2	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0013	3539	6	4	2	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0014	3537	6	0	1	3	0	2	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0015	3541	6	0	2	4	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0016	3539	5	0	0	5	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0017	3539	4	1	1	0	1	1	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0018	3539	4	1	0	2	0	1	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0019	3539	3	0	0	2	0	1	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0020	3538	3	3	0	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0021	3540	2	1	1	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0022	3538	2	2	0	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0023	3539	2	1	1	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0024	3540	2	2	0	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0025	3538	2	0	1	0	1	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0026	3540	2	0	0	1	0	1	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0027	3539	1	0	1	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0028	3541	1	1	0	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0029	3536	1	0	0	1	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0030	3539	1	0	0	1	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0031	3537	1	1	0	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0032	3536	1	0	0	1	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0033	3536	1	0	0	1	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0034	3536	1	0	0	1	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0035	3537	1	0	0	0	0	1	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0036	3537	1	1	0	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0037	3537	1	0	0	1	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0038	3539	1	1	0	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0039	3540	1	0	0	1	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0040	3540	1	0	0	1	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0041	3540	1	0	0	0	0	1	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0042	3541	1	1	0	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0043	3541	1	0	0	1	0	0	copy fasta	UBE2D4	chr7	43921436	43961136