JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2D4_chr7_43921436_43961136	0/0	t0044	3538	1	1	0	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0045	3536	1	0	0	1	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0046	3539	1	1	0	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0047	3537	1	1	0	0	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0048	3538	1	0	0	1	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2D4_chr7_43921436_43961136	0/0	t0049	3527	1	0	0	1	0	0	copy fasta	UBE2D4	chr7	43921436	43961136
UBE2E1_chr3_23800955_23896640	1/1	t0001	1202	304	55	68	136	12	31	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E1_chr3_23800955_23896640	0/0	t0002	1202	49	28	12	0	0	9	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E1_chr3_23800955_23896640	0/0	t0003	1202	10	1	0	3	0	6	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E1_chr3_23800955_23896640	0/0	t0004	1202	2	2	0	0	0	0	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E1_chr3_23800955_23896640	0/0	t0005	1202	2	0	0	2	0	0	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E1_chr3_23800955_23896640	0/0	t0006	1202	1	1	0	0	0	0	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E1_chr3_23800955_23896640	0/0	t0007	1202	1	0	0	1	0	0	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E1_chr3_23800955_23896640	0/0	t0008	1202	1	1	0	0	0	0	copy fasta	UBE2E1	chr3	23800955	23896640
UBE2E2_chr3_23198327_23596794	0/0	t0001	2111	80	16	21	32	4	7	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0002	2111	47	19	3	20	0	5	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0003	2111	39	3	8	23	0	5	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0004	2111	28	3	5	10	3	7	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0005	2114	28	0	5	22	1	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0006	2112	20	1	6	12	0	1	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0007	2111	17	4	1	11	1	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0008	2111	7	2	3	0	1	1	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0009	2112	6	4	2	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0010	2112	6	1	1	3	0	1	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0011	2111	6	0	0	6	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0012	2111	4	4	0	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0013	2112	3	0	1	2	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0014	2115	3	0	1	2	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0015	2111	3	3	0	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0016	2111	3	2	1	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0017	2111	3	3	0	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0018	2110	3	1	0	2	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0019	2112	3	0	2	1	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0020	2112	2	0	0	2	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0021	2112	2	2	0	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0022	2110	2	0	0	1	0	1	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0023	2111	2	0	2	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0024	2111	2	0	0	2	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0025	2111	2	1	0	0	0	1	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0026	2113	1	0	1	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0027	2112	1	1	0	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0028	2112	1	1	0	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0029	2112	1	1	0	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0030	2115	1	0	0	1	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0031	2111	1	0	0	1	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0032	2111	1	0	1	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0033	2111	1	1	0	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0034	2110	1	0	0	0	0	1	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0035	2110	1	1	0	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0036	2111	1	1	0	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794