JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2E2_chr3_23198327_23596794	0/0	t0037	2111	1	0	0	1	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0038	2111	1	1	0	0	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0039	2114	1	0	0	1	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E2_chr3_23198327_23596794	0/0	t0040	2111	1	0	0	1	0	0	copy fasta	UBE2E2	chr3	23198327	23596794
UBE2E3_chr2_180975605_181068425	1/1	t0001	932	253	85	39	89	9	29	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2E3_chr2_180975605_181068425	0/0	t0002	935	37	0	11	14	7	5	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2E3_chr2_180975605_181068425	0/0	t0003	933	28	4	7	10	0	7	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2E3_chr2_180975605_181068425	0/0	t0004	935	6	0	0	6	0	0	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2E3_chr2_180975605_181068425	0/0	t0005	932	5	5	0	0	0	0	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2E3_chr2_180975605_181068425	0/0	t0006	936	2	0	1	0	0	1	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2E3_chr2_180975605_181068425	0/0	t0007	936	2	0	0	2	0	0	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2E3_chr2_180975605_181068425	0/0	t0008	932	2	1	0	1	0	0	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2E3_chr2_180975605_181068425	0/0	t0009	932	1	0	0	1	0	0	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2E3_chr2_180975605_181068425	0/0	t0010	932	1	0	0	1	0	0	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2E3_chr2_180975605_181068425	0/0	t0011	933	1	1	0	0	0	0	copy fasta	UBE2E3	chr2	180975605	181068425
UBE2F_chr2_237962014_238047782	0/1	t0001	1580	296	55	47	159	9	25	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	1/0	t0002	1580	53	22	11	4	3	12	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/0	t0003	1580	6	6	0	0	0	0	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/0	t0004	1580	3	0	2	1	0	0	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/0	t0005	1580	2	2	0	0	0	0	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/0	t0006	1580	1	1	0	0	0	0	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/0	t0007	1580	1	0	0	0	0	1	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/0	t0008	1580	1	0	0	1	0	0	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/0	t0009	1580	1	1	0	0	0	0	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/0	t0010	1580	1	0	0	1	0	0	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/0	t0011	1580	1	0	1	0	0	0	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/0	t0012	1580	1	1	0	0	0	0	copy fasta	UBE2F	chr2	237962014	238047782
UBE2F_chr2_237962014_238047782	0/0	t0013	1580	1	0	1	0	0	0	copy fasta	UBE2F	chr2	237962014	238047782
UBE2G1_chr17_4264259_4371675	1/1	t0001	3655	100	22	22	42	2	10	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0002	3657	87	16	15	40	7	9	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0003	3654	9	2	1	3	0	3	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0004	3655	7	7	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0005	3656	7	5	1	0	0	1	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0006	3657	6	6	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0007	3657	6	6	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0008	3656	6	0	1	5	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0009	3657	5	0	0	5	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0010	3656	4	3	0	1	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0011	3655	2	2	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0012	3655	2	2	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0013	3655	2	2	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0014	3655	2	2	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0015	3655	2	2	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0016	3657	1	0	0	1	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0017	3655	1	0	0	1	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0018	3654	1	1	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0019	3655	1	1	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0020	3657	1	1	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0021	3657	1	0	1	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0022	3655	1	1	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675