JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2G1_chr17_4264259_4371675	0/0	t0023	3656	1	0	1	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0024	3655	1	1	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0025	3654	1	1	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0026	3654	1	0	0	1	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0027	3655	1	0	0	0	0	1	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0028	3657	1	1	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0029	3657	1	0	0	1	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0030	3655	1	1	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0031	3655	1	0	0	1	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0032	3656	1	1	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0033	3657	1	0	0	1	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0034	3657	1	0	0	1	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0035	3655	1	0	0	1	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0036	3656	1	0	0	1	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0037	3657	1	0	0	1	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0038	3657	1	0	0	0	1	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0039	3657	1	1	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G1_chr17_4264259_4371675	0/0	t0040	3656	1	1	0	0	0	0	copy fasta	UBE2G1	chr17	4264259	4371675
UBE2G2_chr21_44763580_44806820	0/0	t0001	2870	95	20	13	54	1	7	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	1/0	t0002	2870	71	8	18	36	4	4	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0003	2872	52	2	11	27	7	5	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/1	t0004	2870	25	5	2	12	3	2	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0005	2872	21	6	3	1	0	11	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0006	2872	8	1	1	0	3	3	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0007	2870	7	5	2	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0008	2871	7	6	1	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0009	2873	6	6	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0010	2872	5	5	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0011	2870	4	0	4	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0012	2871	4	0	1	3	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0013	2872	4	4	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0014	2873	4	0	2	2	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0015	2870	3	3	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0016	2872	3	3	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0017	2870	3	0	2	0	0	1	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0018	2871	2	2	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0019	2872	2	2	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0020	2871	2	1	1	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0021	2870	2	2	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0022	2871	2	2	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0023	2870	2	2	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0024	2871	2	0	1	1	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0025	2872	2	0	0	0	0	2	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0026	2870	2	1	1	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0027	2870	1	0	0	0	0	1	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0028	2870	1	0	0	1	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0029	2870	1	0	0	0	0	1	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0030	2870	1	0	0	1	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0031	2870	1	0	0	1	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0032	2870	1	0	0	1	0	0	copy fasta	UBE2G2	chr21	44763580	44806820