JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2G2_chr21_44763580_44806820	0/0	t0033	2872	1	0	1	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0034	2871	1	1	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0035	2870	1	0	1	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0036	2870	1	1	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0037	2870	1	1	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0038	2870	1	0	0	1	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0039	2870	1	0	1	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0040	2871	1	1	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0041	2871	1	0	0	0	0	1	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0042	2870	1	0	0	1	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0043	2871	1	1	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0044	2871	1	1	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0045	2872	1	1	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0046	2873	1	0	0	0	0	1	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0047	2872	1	0	0	0	0	1	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0048	2872	1	0	0	1	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0049	2872	1	0	0	0	0	1	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0050	2873	1	0	1	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0051	2871	1	1	0	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0052	2871	1	0	0	0	0	1	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0053	2870	1	0	1	0	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2G2_chr21_44763580_44806820	0/0	t0054	2870	1	0	0	1	0	0	copy fasta	UBE2G2	chr21	44763580	44806820
UBE2H_chr7_129825732_129957960	0/0	t0001	4613	122	17	31	51	3	20	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0002	4613	33	14	9	6	1	3	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0003	4613	21	15	3	0	1	2	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0004	4613	15	0	4	11	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/1	t0005	4613	10	0	3	3	2	1	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0006	4615	10	1	0	1	2	6	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0007	4613	9	1	2	5	0	1	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0008	4613	7	7	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0009	4615	5	5	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0010	4613	5	5	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0011	4613	5	0	1	0	0	4	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0012	4613	4	4	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0013	4612	3	0	3	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0014	4613	3	0	0	3	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0015	4613	3	2	1	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0016	4615	2	2	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0017	4612	2	0	0	2	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0018	4615	2	1	0	0	0	1	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0019	4611	1	1	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0020	4612	1	0	0	1	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0021	4592	1	0	0	1	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0022	4613	1	1	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0023	4615	1	1	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0024	4613	1	1	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0025	4613	1	0	0	0	1	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0026	4615	1	0	1	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0027	4613	1	0	1	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0028	4613	1	1	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960