JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2H_chr7_129825732_129957960	0/0	t0029	4613	1	0	0	1	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0030	4613	1	0	1	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0031	4615	1	0	0	1	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0032	4615	1	0	0	1	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0033	4592	1	0	0	1	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	1/0	t0034	4611	1	0	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0035	4614	1	0	0	0	0	1	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0036	4614	1	0	0	0	0	1	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0037	4612	1	0	0	1	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0038	4613	1	1	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0039	4615	1	1	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0040	4613	1	0	1	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0041	4613	1	1	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0042	4612	1	0	1	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0043	4612	1	0	0	1	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0044	4614	1	0	0	1	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0045	4613	1	1	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0046	4587	1	0	0	1	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2H_chr7_129825732_129957960	0/0	t0047	4613	1	1	0	0	0	0	copy fasta	UBE2H	chr7	129825732	129957960
UBE2I_chr16_1304636_1332017	0/1	t0001	2375	157	15	28	83	8	22	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0002	2375	46	28	7	1	3	7	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0003	2375	36	0	15	12	4	5	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0004	2375	22	0	3	14	1	4	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0005	2375	17	4	8	5	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	1/0	t0006	2374	7	2	3	0	0	1	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0007	2375	5	5	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0008	2375	5	4	0	0	0	1	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0009	2375	5	3	2	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0010	2375	4	4	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0011	2375	4	4	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0012	2375	4	3	1	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0013	2375	4	0	0	4	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0014	2375	3	3	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0015	2375	3	3	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0016	2375	2	0	0	0	2	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0017	2365	2	0	0	2	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0018	2375	2	0	1	0	0	1	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0019	2376	2	0	0	2	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0020	2375	2	0	2	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0021	2375	2	1	1	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0022	2375	2	2	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0023	2375	2	2	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0024	2375	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0025	2376	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0026	2375	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0027	2375	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0028	2375	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0029	2375	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0030	2375	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0031	2375	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017