JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2I_chr16_1304636_1332017	0/0	t0032	2375	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0033	2375	1	0	1	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0034	2375	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0035	2375	1	0	0	1	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0036	2375	1	0	1	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0037	2375	1	0	0	1	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0038	2375	1	0	0	1	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0039	2375	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0040	2375	1	0	0	1	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0041	2375	1	0	0	1	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0042	2375	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0043	2375	1	0	0	1	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0044	2375	1	0	0	1	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0045	2375	1	1	0	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0046	2376	1	0	0	0	0	1	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0047	2375	1	0	1	0	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0048	2365	1	0	0	1	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2I_chr16_1304636_1332017	0/0	t0049	2375	1	0	0	1	0	0	copy fasta	UBE2I	chr16	1304636	1332017
UBE2J1_chr6_89321625_89357722	0/1	t0001	3207	102	4	9	73	0	15	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	1/0	t0002	3208	92	8	27	42	6	8	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0003	3207	71	18	7	45	0	1	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0004	3207	25	14	2	0	3	6	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0005	3208	23	0	6	10	3	4	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0006	3207	23	3	8	8	1	3	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0007	3207	13	13	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0008	3208	7	0	3	0	0	4	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0009	3208	5	3	1	1	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0010	3207	5	4	1	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0011	3203	4	4	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0012	3209	3	3	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0013	3207	3	2	1	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0014	3207	3	2	0	0	0	1	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0015	3208	3	3	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0016	3207	2	2	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0017	3207	2	0	1	0	1	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0018	3207	2	2	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0019	3207	2	0	0	2	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0020	3208	2	2	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0021	3207	2	2	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0022	3208	1	1	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0023	3208	1	0	1	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0024	3207	1	0	1	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0025	3203	1	1	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0026	3208	1	0	1	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0027	3209	1	0	0	0	0	1	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0028	3209	1	1	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0029	3207	1	0	1	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0030	3209	1	0	0	0	0	1	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0031	3207	1	1	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0032	3207	1	0	0	1	0	0	copy fasta	UBE2J1	chr6	89321625	89357722