JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2J1_chr6_89321625_89357722	0/0	t0033	3208	1	1	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0034	3208	1	1	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0035	3208	1	0	0	1	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0036	3207	1	0	0	1	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J1_chr6_89321625_89357722	0/0	t0037	3208	1	1	0	0	0	0	copy fasta	UBE2J1	chr6	89321625	89357722
UBE2J2_chr1_1248912_1278854	0/0	t0001	1484	125	16	19	74	2	14	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	1/1	t0002	1481	94	28	29	16	8	11	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0003	1481	28	5	1	17	0	5	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0004	1481	17	12	3	0	0	2	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0005	1481	9	8	1	0	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0006	1481	9	0	0	9	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0007	1481	8	0	0	8	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0008	1481	7	3	0	0	2	2	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0009	1481	5	0	0	5	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0010	1484	5	0	0	5	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0011	1481	3	0	3	0	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0012	1481	2	2	0	0	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0013	1481	2	2	0	0	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0014	1481	2	0	0	0	0	2	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0015	1481	1	1	0	0	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0016	1481	1	0	1	0	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0017	1481	1	1	0	0	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0018	1481	1	0	0	1	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0019	1481	1	0	1	0	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0020	1484	1	0	0	1	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0021	1484	1	0	0	1	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2J2_chr1_1248912_1278854	0/0	t0022	1484	1	0	0	1	0	0	copy fasta	UBE2J2	chr1	1248912	1278854
UBE2K_chr4_39693136_39787792	0/0	t0001	4552	139	31	23	60	5	20	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/1	t0002	4552	53	0	9	34	2	7	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0003	4550	43	29	5	7	2	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	1/0	t0004	4551	28	2	5	15	3	2	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0005	4551	15	10	1	3	0	1	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0006	4552	13	2	0	7	0	4	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0007	4553	9	2	1	2	0	4	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0008	4552	5	3	0	1	0	1	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0009	4553	5	0	0	5	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0010	4551	3	2	0	1	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0011	4551	3	1	1	1	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0012	4551	2	2	0	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0013	4551	2	1	1	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0014	4550	1	1	0	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0015	4551	1	0	0	0	1	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0016	4551	1	1	0	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0017	4551	1	1	0	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0018	4552	1	0	1	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0019	4552	1	0	0	0	0	1	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0020	4552	1	0	1	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0021	4551	1	0	0	1	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0022	4552	1	0	0	1	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0023	4552	1	0	1	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792