JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2K_chr4_39693136_39787792	0/0	t0024	4552	1	0	0	0	1	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0025	4552	1	1	0	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0026	4551	1	1	0	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0027	4550	1	1	0	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0028	4552	1	0	1	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2K_chr4_39693136_39787792	0/0	t0029	4550	1	1	0	0	0	0	copy fasta	UBE2K	chr4	39693136	39787792
UBE2L3_chr22_21562714_21629034	1/0	t0001	2397	166	40	31	62	9	23	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0002	2398	112	3	17	77	3	12	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0003	2397	31	30	1	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0004	2398	5	5	0	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0005	2397	5	0	0	4	0	1	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0006	2397	3	0	0	2	0	1	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0007	2397	3	3	0	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0008	2397	3	2	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0009	2398	2	1	1	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0010	2397	2	1	1	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/1	t0011	2397	2	0	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0012	2397	1	0	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0013	2398	1	0	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0014	2398	1	0	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0015	2398	1	0	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0016	2398	1	0	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0017	2398	1	0	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0018	2398	1	1	0	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0019	2397	1	0	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0020	2397	1	1	0	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0021	2397	1	0	1	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0022	2397	1	0	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0023	2397	1	0	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0024	2397	1	1	0	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0025	2397	1	0	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0026	2397	1	0	1	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0027	2397	1	0	0	1	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0028	2398	1	0	1	0	0	0	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L3_chr22_21562714_21629034	0/0	t0029	2397	1	0	0	0	0	1	copy fasta	UBE2L3	chr22	21562714	21629034
UBE2L5_chr13_30417493_30434758	0/0	t0001	2264	160	6	40	84	11	19	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/1	t0002	2269	109	16	20	50	5	17	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	1/0	t0003	2267	39	37	1	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0004	2268	15	0	1	10	0	4	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0005	2264	13	0	0	13	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0006	2266	11	10	1	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0007	2265	9	1	2	4	0	2	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0008	2270	8	0	1	3	0	4	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0009	2264	7	0	6	0	0	1	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0010	2270	4	0	0	4	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0011	2263	4	2	2	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0012	2268	4	0	0	3	0	1	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0013	2263	4	1	2	1	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0014	2268	3	3	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0015	2269	3	0	0	3	0	0	copy fasta	UBE2L5	chr13	30417493	30434758