JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2L5_chr13_30417493_30434758	0/0	t0016	2268	2	2	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0017	2268	2	2	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0018	2264	2	0	0	2	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0019	2269	2	2	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0020	2268	2	2	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0021	2263	2	0	2	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0022	2264	2	0	0	2	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0023	2268	2	1	0	1	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0024	2269	1	0	0	1	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0025	2267	1	1	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0026	2269	1	1	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0027	2267	1	1	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0028	2265	1	0	0	1	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0029	2269	1	0	1	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0030	2269	1	1	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0031	2265	1	0	0	1	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0032	2270	1	1	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0033	2271	1	0	0	1	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0034	2265	1	0	1	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0035	2263	1	0	0	1	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0036	2267	1	1	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0037	2268	1	1	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0038	2265	1	0	0	1	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0039	2266	1	0	1	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0040	2262	1	0	0	1	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0041	2268	1	1	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0042	2267	1	1	0	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0043	2267	1	0	1	0	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L5_chr13_30417493_30434758	0/0	t0044	2264	1	0	0	1	0	0	copy fasta	UBE2L5	chr13	30417493	30434758
UBE2L6_chr11_57546662_57572672	0/1	t0001	758	190	43	33	85	6	22	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2L6_chr11_57546662_57572672	1/0	t0002	758	159	42	39	56	8	13	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2L6_chr11_57546662_57572672	0/0	t0003	758	8	0	0	8	0	0	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2L6_chr11_57546662_57572672	0/0	t0004	758	4	1	0	0	2	1	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2L6_chr11_57546662_57572672	0/0	t0005	758	3	3	0	0	0	0	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2L6_chr11_57546662_57572672	0/0	t0006	758	1	0	0	1	0	0	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2L6_chr11_57546662_57572672	0/0	t0007	758	1	1	0	0	0	0	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2L6_chr11_57546662_57572672	0/0	t0008	758	1	1	0	0	0	0	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2L6_chr11_57546662_57572672	0/0	t0009	758	1	1	0	0	0	0	copy fasta	UBE2L6	chr11	57546662	57572672
UBE2M_chr19_58550712_58563611	0/1	t0001	608	339	65	54	171	15	33	copy fasta	UBE2M	chr19	58550712	58563611
UBE2M_chr19_58550712_58563611	0/0	t0002	609	56	17	10	23	2	4	copy fasta	UBE2M	chr19	58550712	58563611
UBE2M_chr19_58550712_58563611	0/0	t0003	609	7	3	1	2	0	1	copy fasta	UBE2M	chr19	58550712	58563611
UBE2M_chr19_58550712_58563611	0/0	t0004	608	3	3	0	0	0	0	copy fasta	UBE2M	chr19	58550712	58563611
UBE2M_chr19_58550712_58563611	0/0	t0005	608	2	0	1	0	1	0	copy fasta	UBE2M	chr19	58550712	58563611
UBE2M_chr19_58550712_58563611	0/0	t0006	608	1	0	1	0	0	0	copy fasta	UBE2M	chr19	58550712	58563611
UBE2M_chr19_58550712_58563611	0/0	t0007	609	1	0	1	0	0	0	copy fasta	UBE2M	chr19	58550712	58563611
UBE2N_chr12_93400684_93446947	1/0	t0001	4419	44	4	10	21	3	5	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0002	4420	43	4	11	21	2	5	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0003	4421	30	4	4	19	0	3	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0004	4417	19	0	2	15	1	1	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0005	4416	17	0	4	10	2	1	copy fasta	UBE2N	chr12	93400684	93446947