JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2N_chr12_93400684_93446947	0/0	t0006	4422	16	2	2	11	1	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0007	4417	14	2	8	0	3	1	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0008	4405	13	13	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0009	4419	9	0	0	7	2	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0010	4418	8	3	1	0	0	4	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0011	4419	8	8	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0012	4418	7	3	1	3	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/1	t0013	4419	7	3	2	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0014	4443	6	0	3	1	0	2	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0015	4407	5	0	4	0	0	1	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0016	4432	5	0	0	5	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0017	4433	5	0	0	5	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0018	4442	5	0	0	5	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0019	4431	4	0	0	4	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0020	4436	4	0	3	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0021	4437	4	0	1	1	0	2	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0022	4420	4	4	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0023	4421	4	4	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0024	4422	4	3	1	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0025	4416	3	0	2	0	1	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0026	4418	3	2	0	0	0	1	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0027	4418	3	1	1	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0028	4420	3	0	0	3	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0029	4421	3	0	1	2	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0030	4422	3	0	0	3	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0031	4435	3	0	2	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0032	4441	3	0	2	0	0	1	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0033	4419	3	3	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0034	4416	2	0	0	2	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0035	4421	2	2	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0036	4418	2	0	2	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0037	4404	2	1	1	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0038	4406	2	0	0	2	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0039	4438	2	0	2	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0040	4445	2	0	0	2	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0041	4457	2	0	0	2	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0042	4422	2	1	1	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0043	4409	2	2	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0044	4436	2	2	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0045	4422	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0046	4421	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0047	4420	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0048	4419	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0049	4418	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0050	4415	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0051	4419	1	0	1	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0052	4416	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0053	4433	1	0	0	0	0	1	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0054	4400	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0055	4420	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947