JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2N_chr12_93400684_93446947	0/0	t0056	4434	1	0	0	0	1	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0057	4437	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0058	4440	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0059	4447	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0060	4448	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0061	4449	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0062	4453	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0063	4455	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0064	4432	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0065	4438	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0066	4430	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0067	4420	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0068	4422	1	0	1	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0069	4419	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0070	4443	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0071	4444	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0072	4419	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0073	4419	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0074	4419	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0075	4429	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0076	4429	1	0	1	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0077	4406	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0078	4419	1	0	0	1	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0079	4419	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0080	4420	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0081	4422	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2N_chr12_93400684_93446947	0/0	t0082	4421	1	1	0	0	0	0	copy fasta	UBE2N	chr12	93400684	93446947
UBE2O_chr17_76384456_76458152	0/1	t0001	1497	133	17	25	69	5	16	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0002	1498	123	39	23	47	1	13	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0003	1496	52	5	1	33	5	8	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	1/0	t0004	1499	19	12	1	2	1	2	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0005	1499	16	6	4	3	0	3	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0006	1499	9	5	2	0	1	1	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0007	1497	3	1	1	0	1	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0008	1498	2	2	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0009	1497	1	0	1	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0010	1498	1	1	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0011	1497	1	0	0	0	0	1	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0012	1498	1	1	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0013	1498	1	1	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0014	1498	1	1	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2O_chr17_76384456_76458152	0/0	t0015	1499	1	1	0	0	0	0	copy fasta	UBE2O	chr17	76384456	76458152
UBE2Q1_chr1_154543577_154563662	0/1	t0001	1968	149	14	31	75	12	16	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	1/0	t0002	1971	76	26	16	21	1	11	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0003	1968	52	1	9	29	3	10	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0004	1966	16	16	0	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0005	1968	15	15	0	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0006	1968	13	9	4	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0007	1971	8	0	4	0	2	2	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0008	1971	6	0	0	6	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662