JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2Q1_chr1_154543577_154563662	0/0	t0009	1957	4	4	0	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0010	1968	4	0	0	4	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0011	1974	4	3	0	0	0	1	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0012	1968	3	0	0	3	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0013	1968	2	2	0	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0014	1971	2	0	0	1	0	1	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0015	1974	2	0	2	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0016	1971	1	0	0	1	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0017	1966	1	1	0	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0018	1968	1	0	0	1	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0019	1968	1	0	0	0	0	1	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0020	1971	1	0	0	1	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0021	1971	1	1	0	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0022	1971	1	1	0	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0023	1969	1	1	0	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0024	1971	1	0	1	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q1_chr1_154543577_154563662	0/0	t0025	1986	1	0	1	0	0	0	copy fasta	UBE2Q1	chr1	154543577	154563662
UBE2Q2_chr15_75838447_75906078	0/1	t0001	1844	319	58	55	160	9	36	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0002	1844	8	8	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0003	1844	7	6	1	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0004	1844	3	0	0	3	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0005	1844	3	0	0	1	1	1	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0006	1844	2	0	0	0	2	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0007	1844	2	1	1	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0008	1841	2	2	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0009	1844	1	0	0	1	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0010	1844	1	0	0	0	0	1	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0011	1844	1	1	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0012	1844	1	0	1	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0013	1844	1	1	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0014	1844	1	1	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	1/0	t0015	1841	1	0	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0016	1844	1	1	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0017	1844	1	1	0	0	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2Q2_chr15_75838447_75906078	0/0	t0018	1844	1	0	0	1	0	0	copy fasta	UBE2Q2	chr15	75838447	75906078
UBE2QL1_chr5_6443859_6501723	1/1	t0001	5410	178	16	37	87	8	28	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0002	5410	22	9	2	11	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0003	5409	16	16	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0004	5410	12	5	5	0	0	2	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0005	5409	10	0	8	0	0	2	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0006	5410	9	0	7	0	2	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0007	5409	7	4	0	1	0	2	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0008	5410	7	7	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0009	5410	6	0	0	6	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0010	5409	5	2	3	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0011	5410	5	0	3	0	0	2	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0012	5410	5	5	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0013	5410	4	0	4	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0014	5410	4	4	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0015	5410	3	2	1	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723