JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2QL1_chr5_6443859_6501723	0/0	t0016	5410	3	3	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0017	5410	3	0	0	3	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0018	5410	2	2	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0019	5410	2	2	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0020	5410	2	2	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0021	5410	2	0	0	2	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0022	5410	2	0	0	2	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0023	5410	2	0	0	0	0	2	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0024	5410	1	0	0	0	1	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0025	5410	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0026	5410	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0027	5410	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0028	5410	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0029	5409	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0030	5409	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0031	5409	1	0	1	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0032	5410	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0033	5410	1	0	0	1	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0034	5410	1	0	1	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0035	5410	1	0	1	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0036	5410	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0037	5410	1	0	1	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0038	5409	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0039	5410	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0040	5410	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0041	5410	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0042	5410	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0043	5410	1	0	0	0	1	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0044	5410	1	0	0	1	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0045	5410	1	0	0	1	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0046	5410	1	0	0	0	0	1	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0047	5410	1	0	1	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0048	5410	1	0	1	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0049	5410	1	0	0	1	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0050	5410	1	0	0	0	0	1	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0051	5409	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2QL1_chr5_6443859_6501723	0/0	t0052	5410	1	1	0	0	0	0	copy fasta	UBE2QL1	chr5	6443859	6501723
UBE2R2_chr9_33812160_33925399	1/0	t0001	3761	87	28	12	33	4	9	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0002	3761	81	4	18	52	2	5	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0003	3761	45	13	12	10	3	7	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0004	3754	29	7	2	18	0	2	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0005	3761	11	0	8	0	0	3	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0006	3754	10	0	0	10	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0007	3762	8	8	0	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0008	3762	7	1	3	2	0	1	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0009	3762	7	1	1	4	0	1	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0010	3728	6	0	0	6	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0011	3760	6	1	2	0	3	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0012	3762	5	4	1	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0013	3764	4	4	0	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399