JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UBE2R2_chr9_33812160_33925399	0/0	t0014	3761	4	3	1	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0015	3762	4	0	1	2	0	1	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0016	3761	4	0	0	0	0	4	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0017	3762	4	0	1	3	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0018	3755	3	0	0	3	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0019	3761	3	0	1	0	2	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0020	3760	3	0	2	0	1	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0021	3760	3	0	0	0	0	3	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0022	3761	2	2	0	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0023	3756	2	2	0	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0024	3761	2	0	0	1	0	1	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0025	3761	2	0	0	0	0	2	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0026	3762	2	2	0	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0027	3755	2	0	1	1	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0028	3749	1	0	0	0	0	1	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0029	3759	1	1	0	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0030	3761	1	0	0	0	0	1	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0031	3761	1	0	0	0	0	1	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0032	3756	1	1	0	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0033	3761	1	0	0	1	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0034	3761	1	0	0	1	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0035	3760	1	0	0	0	0	1	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0036	3761	1	1	0	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/1	t0037	3762	1	0	0	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0038	3761	1	1	0	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0039	3729	1	0	0	1	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0040	3761	1	0	0	0	1	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0041	3761	1	0	0	0	0	1	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0042	3761	1	1	0	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0043	3761	1	1	0	0	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0044	3762	1	0	0	0	0	1	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0045	3755	1	0	0	1	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0046	3762	1	0	0	1	0	0	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2R2_chr9_33812160_33925399	0/0	t0047	3761	1	0	0	0	0	1	copy fasta	UBE2R2	chr9	33812160	33925399
UBE2S_chr19_55394745_55412788	1/0	t0001	1891	132	8	21	84	5	13	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/1	t0002	1891	84	30	22	4	9	18	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0003	1891	44	8	5	18	1	12	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0004	1891	23	7	4	11	0	1	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0005	1891	14	9	5	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0006	1891	10	0	9	1	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0007	1891	8	7	1	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0008	1891	7	7	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0009	1891	6	0	2	0	2	2	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0010	1891	4	4	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0011	1891	4	4	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0012	1891	3	3	0	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0013	1891	3	0	2	0	1	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0014	1891	2	0	0	0	0	2	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0015	1891	2	1	1	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788
UBE2S_chr19_55394745_55412788	0/0	t0016	1891	2	0	2	0	0	0	copy fasta	UBE2S	chr19	55394745	55412788